Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9317 123 6e-23 seq8967 123 6e-23 seq5419 123 6e-23 seq783 123 6e-23 seq16268 120 7e-22 seq5107 120 7e-22 seq1038 120 7e-22 seq22364 111 4e-19 seq11515 86.0 1e-11 seq8819 86.0 1e-11 seq4503 86.0 1e-11 seq856 86.0 1e-11 seq659 86.0 1e-11 >seq9317 Length=8507 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 940 TTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 881 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 880 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 821 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 820 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 765 >seq8967 Length=8834 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 6522 TTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 6581 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 6582 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 6641 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 6642 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 6697 >seq5419 Length=14078 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 13740 TTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 13681 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 13680 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 13621 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 13620 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 13565 >seq783 Length=38083 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| |||||| || |||||||||||||| ||| Sbjct 21104 TTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTGC 21045 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || |||| |||||| Sbjct 21044 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCC 20985 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 20984 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 20929 >seq16268 Length=4329 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 3181 TTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 3240 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 3241 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 3300 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 3301 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 3356 >seq5107 Length=14694 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 12792 TTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 12733 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || |||| |||||| Sbjct 12732 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCC 12673 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 12672 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 12617 >seq1038 Length=34009 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 17482 TTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 17423 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 17422 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 17363 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 17362 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 17307 >seq22364 Length=2645 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| || || || |||||||| ||||| ||| Sbjct 2188 TTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGACGTTGC 2129 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 2128 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 2069 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 2068 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 2013 >seq11515 Length=6677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 5724 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 5783 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 5784 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 5815 >seq8819 Length=8975 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 8628 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 8569 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 8568 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 8537 >seq4503 Length=16266 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| | ||| || || ||||||||||||| |||||||||||| | ||| Sbjct 8748 CGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTG 8689 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 199500 | ||||| || |||||||| || |||||||| Sbjct 8688 CGACCATCCTCAAGCTGCTTGCCAGCGAAGAT 8657 >seq856 Length=36659 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 5451 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 5510 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 5511 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 5542 >seq659 Length=40447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 37827 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 37768 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 37767 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 37736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178525911175132