Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq4503 91.5 2e-13
seq10671 82.4 9e-11
seq783 82.4 9e-11
>seq4503
Length=16266
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/88 (83%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| ||| | ||| ||||||||||||||||||||| | |||||||| |
Sbjct 7936 ACGCAAAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 7877
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465
||| ||||||||||| |||||||| |||
Sbjct 7876 GTCCTCGAGCTGCTTCCCGGCGAAGATC 7849
>seq10671
Length=7258
Score = 82.4 bits (90), Expect = 9e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| ||| | || ||||||||||||||||||||| | |||||||| |
Sbjct 3443 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 3384
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465
||| ||||||||||| ||||| || |||
Sbjct 3383 GTCCTCGAGCTGCTTACCGGCAAAGATC 3356
>seq783
Length=38083
Score = 82.4 bits (90), Expect = 9e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468
|| ||||||||||| | | || || | || || | |||||| || ||||| || |
Sbjct 21110 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 21051
Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528
|| ||||| || | || | | |||||| ||| |||||| ||||| || | |
Sbjct 21050 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 20991
Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588
||||| | |||||||||| ||||| || || || || |||||||| ||||||| |
Sbjct 20990 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 20931
Query 46589 TGCAT 46593
|||||
Sbjct 20930 TGCAT 20926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565053312685920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |