Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4503 91.5 2e-13 seq10671 82.4 9e-11 seq783 82.4 9e-11 >seq4503 Length=16266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | ||| ||||||||||||||||||||| | |||||||| | Sbjct 7936 ACGCAAAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 7877 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| |||||||| ||| Sbjct 7876 GTCCTCGAGCTGCTTCCCGGCGAAGATC 7849 >seq10671 Length=7258 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || ||||||||||||||||||||| | |||||||| | Sbjct 3443 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 3384 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| ||||| || ||| Sbjct 3383 GTCCTCGAGCTGCTTACCGGCAAAGATC 3356 >seq783 Length=38083 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 || ||||||||||| | | || || | || || | |||||| || ||||| || | Sbjct 21110 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 21051 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 || ||||| || | || | | |||||| ||| |||||| ||||| || | | Sbjct 21050 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 20991 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| | |||||||||| ||||| || || || || |||||||| ||||||| | Sbjct 20990 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 20931 Query 46589 TGCAT 46593 ||||| Sbjct 20930 TGCAT 20926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565053312685920