Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq276 104 3e-17 seq5477 96.9 4e-15 seq2413 93.3 5e-14 seq8748 84.2 3e-11 seq5043 84.2 3e-11 seq6 82.4 9e-11 >seq276 Length=52815 Score = 104 bits (114), Expect = 3e-17 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 16050 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTT-TCGCG 16108 |||| ||||| | ||||||||||||||||| || | ||||| || |||||| | || Sbjct 19217 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCG 19275 Query 16109 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 || | |||||| | ||||| ||||| | ||| ||||||||||||||||| | || Sbjct 19276 TGCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAA 19335 Query 16169 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227 | || | | | |||| | |||||| || ||||| | || || ||| | ||| ||| | Sbjct 19336 TTCTGAGCCAGAAACAGT-GATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAA 19394 Query 16228 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 | | ||| ||||| || ||||| ||| | || || ||||| Sbjct 19395 GCAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACC 19437 >seq5477 Length=13945 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 16056 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTT-TCGCGAGCGA 16113 ||||||| ||||||||||||||||| || | || || || |||||| | || || | Sbjct 2076 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATACAAGG-TGATTTCTTTCGTGCCA 2134 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 ||| || | ||||| ||||| || ||| ||||||||||||||||| | || | || Sbjct 2135 TTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTG 2194 Query 16174 CGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | | |||| | |||||| || ||||||| || || || | ||| ||| || | | Sbjct 2195 AGCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCAAGTAAA 2253 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || || || || ||||| ||| | ||| || ||||| Sbjct 2254 GTTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 2291 >seq2413 Length=23774 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 16056 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 ||||||| ||||||||||||||||| || | ||||| ||| || | || || | Sbjct 2906 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 2847 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 ||| || | ||||| ||||| || ||| ||||||||||||||||| | ||| | || Sbjct 2846 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAATTCTGA 2787 Query 16175 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | | | |||| | ||| || || ||||| | || || ||| | ||| || || | || Sbjct 2786 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 2728 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 |||| || || ||||| || | ||| || ||||| Sbjct 2727 TCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACC 2691 >seq8748 Length=9037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 202/299 (68%), Gaps = 5/299 (2%) Strand=Plus/Plus Query 102122 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCT 102179 |||| || ||||| ||||||||| | ||| || || |||| || ||| |||| | Sbjct 8448 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGC-TTCATTTGGT 8506 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 102238 || || ||| | || ||||| ||||||||||| ||||||||||| || ||| || Sbjct 8507 GAACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGG-AAGTTTTGCTGC 8565 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 |||| |||||| ||||| || ||| | ||||| || || || || | || Sbjct 8566 AATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAAT 8625 Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTAT 102358 |||||||| || ||||| || | ||| ||||| ||||||| || ||| || Sbjct 8626 TTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTGAATAA 8685 Query 102359 TAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGG 102417 |||||||| | ||| |||| | || || || || ||||| ||||| |||| Sbjct 8686 TAAACCAAATAATGAACGTATTGAGGAAATAATTCGAGAGGCTGTTGATATTGAAAAGG 8744 >seq5043 Length=14830 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 176891 GCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCA 176950 ||||| | |||||| | ||| ||||||||||| || ||||| || ||| ||||| Sbjct 2264 GCATCTCTAACATTTAAAAGCTTTCCACGAAGAGGAAAAACACCATAAAAATCACGACCG 2205 Query 176951 ACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGT 177010 | || | ||| ||||| || | ||||| || ||||| || || || | ||||| Sbjct 2204 ATAACTCCCAAACCAGCAACAGCCAAAGTTTTGGCTGAATCTCCTTCAGTTAGAATGAGC 2145 Query 177011 GTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 177069 ||||| || | ||| | || || || | ||||||||| |||||||||| || ||| Sbjct 2144 GTACATTTACGAGAATTACGAGTTCCAGCTTCGTTCGCATCTTCCAATTTGGCAACACC 2086 >seq6 Length=123133 Score = 82.4 bits (90), Expect = 9e-11 Identities = 175/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 102122 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCT 102179 |||| || ||||| || |||||| | ||| || || |||| || ||| |||| | Sbjct 115974 TCAAGAAAAAAGCTGAATGGGCTCTTCGTTGGACTGCTAGTAAAGAAGC-TTCATTTGGT 115916 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 102238 || || ||| | || ||||| ||||||||||| ||||||||||| || ||| || Sbjct 115915 GAACGTCTCATTGCTTTTGCCACAGTTGAGGGTATATTCTTCTCTGG-AAGTTTTGCTGC 115857 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 |||| |||||| ||||| || ||| | ||||| || || || || | || Sbjct 115856 AATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGGCTGACACAAAGTAATGAATTAAT 115797 Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTAT 102358 |||||||| || ||||| || | ||| ||||| ||||||| || ||| || Sbjct 115796 TTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTGAATAA 115737 Query 102359 TAAACCAACGACTGA 102373 |||||||| || ||| Sbjct 115736 TAAACCAAAGAATGA 115722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620539137901120