Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq13211 118 1e-21 seq8748 118 1e-21 seq1949 118 1e-21 seq545 114 2e-20 seq6 114 2e-20 seq5477 96.9 4e-15 seq261 96.9 4e-15 seq276 87.8 2e-12 seq2413 82.4 9e-11 >seq13211 Length=5644 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 4768 GCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCA 4709 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||||||||| || Sbjct 4708 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATA 4649 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || || ||||| | ||||| ||| |||| Sbjct 4648 CCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAA 4611 >seq8748 Length=9037 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 8658 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGTCCA 8599 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 8598 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 8539 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 8538 CCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAA 8501 >seq1949 Length=26475 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 12036 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGTCCA 11977 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 11976 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 11917 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 11916 CCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA 11879 >seq545 Length=42957 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 28592 GCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCA 28533 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 28532 GGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 28473 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 28472 CCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA 28435 >seq6 Length=123133 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| || ||| Sbjct 115764 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGCCCA 115823 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 115824 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 115883 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 115884 CCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAA 115921 >seq5477 Length=13945 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | ||||| ||| || ||| Sbjct 2071 CGTTTTTTCCCAATAGCATCAATCTCATCAATAAAAAGAATACAAGGTGATTTCTTTCGT 2130 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| |||||| | || | ||||| | |||||||| || |||||||||| ||| Sbjct 2131 GCCATTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAAT 2190 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || ||||| || ||||||| ||| || || | ||| || || Sbjct 2191 TCTGAGCCAGAAACAGTG-ATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCAAG 2249 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | ||| || || || || |||| ||||| |||||| || || Sbjct 2250 TAAAGTTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 2291 >seq261 Length=53585 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 49162 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGTCCA 49221 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAA 119611 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| Sbjct 49222 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAA 49277 >seq276 Length=52815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | || || ||| || ||| Sbjct 19217 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGATTTCTTTCGT 19276 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| ||| || | || | ||||| | |||||||| || |||||||||| ||| Sbjct 19277 GCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAAT 19336 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || ||||| || ||||| | ||| ||||| | ||| || || Sbjct 19337 TCTGAGCCAGAAACAGTG-ATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAAG 19395 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | ||| ||||| || || |||| ||||| ||||| || || Sbjct 19396 CAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACC 19437 >seq2413 Length=23774 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | || || ||| || ||| Sbjct 2911 CGTTTTTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGT 2852 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| |||||| | || | ||||| | |||||||| || |||||||||| || Sbjct 2851 GCCATTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAAT 2792 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || || || || ||||| | ||| || || | ||| ||| || Sbjct 2791 TCTGAGCCAGAAACAGTG-ATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAG 2733 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | |||||| || || || |||| |||| |||||| || || Sbjct 2732 CAAAGTCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACC 2691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588783139808800