Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5477 102 1e-16 seq276 102 1e-16 seq2413 89.7 6e-13 >seq5477 Length=13945 Score = 102 bits (112), Expect = 1e-16 Identities = 158/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTT-TCGCGGGCGA 9420 ||||||| ||||||||||||||||| || | |||||| || |||||| | || || | Sbjct 2076 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATACAAGG-TGATTTCTTTCGTGCCA 2134 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 |||| || | ||| | || | | || ||| ||||||||||||||||| | || | || Sbjct 2135 TTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTG 2194 Query 9481 CGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 | | | |||| | |||||| || ||||||| || || || | ||| ||| || | | Sbjct 2195 AGCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCAAGTAAA 2253 Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 || || || || ||||| ||| | ||| || |||||| Sbjct 2254 GTTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACCC 2292 >seq276 Length=52815 Score = 102 bits (112), Expect = 1e-16 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTT-TCGCG 9415 |||| ||||| | ||||||||||||||||| || | ||| || || |||||| | || Sbjct 19217 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCG 19275 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || |||||||| | ||| | || | | | ||| ||||||||||||||||| | || Sbjct 19276 TGCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAA 19335 Query 9476 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | || | | | |||| | |||||| || ||||| | || || ||| | ||| ||| | Sbjct 19336 TTCTGAGCCAGAAACAGT-GATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAA 19394 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 | | ||| ||||| || ||||| ||| | || || |||||| Sbjct 19395 GCAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACCC 19438 >seq2413 Length=23774 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 ||||||| ||||||||||||||||| || | ||| || ||| || | || || || Sbjct 2906 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 2847 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 ||| || | ||| | || | | || ||| ||||||||||||||||| | ||| | || Sbjct 2846 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAATTCTGA 2787 Query 9482 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | | |||| | ||| || || ||||| | || || ||| | ||| || || | || Sbjct 2786 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 2728 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 |||| || || ||||| || | ||| || |||||| Sbjct 2727 TCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACCC 2690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589787610787040