Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq22837 89.7 6e-13 seq3305 89.7 6e-13 seq8667 84.2 3e-11 seq3073 84.2 3e-11 >seq22837 Length=2556 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || |||| || || | ||| | || || ||||||||||||||||| ||||||| ||| Sbjct 2197 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 2138 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 |||||| ||| || ||||| || |||||||| | |||||||| |||| Sbjct 2137 GCAACCTCTAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 2089 >seq3305 Length=19995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || |||| || || | ||| | || || ||||||||||||||||| ||||||| ||| Sbjct 16187 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 16128 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 |||||| ||| || ||||| || |||||||| | |||||||| |||| Sbjct 16127 GCAACCTCTAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 16079 >seq8667 Length=9130 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || |||| || || | ||| | || || ||||||||||||||||| ||||||| ||| Sbjct 4675 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 4616 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 |||||| || || ||||| || |||||||| | |||||||| |||| Sbjct 4615 GCAACCTCCAATATTTGCACTGCTCAAGCACTTCCTGCTAATATTTCTG 4567 >seq3073 Length=20927 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || |||| || || | ||| | || || ||||||||||||||||| ||||||| ||| Sbjct 18651 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 18710 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 |||||| || || ||||| || |||||||| | |||||||| |||| Sbjct 18711 GCAACCTCCAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 18759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587858642634560