Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq22837 89.7 6e-13
seq3305 89.7 6e-13
seq8667 84.2 3e-11
seq3073 84.2 3e-11
>seq22837
Length=2556
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619
|| |||| || || | ||| | || || ||||||||||||||||| ||||||| |||
Sbjct 2197 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 2138
Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668
|||||| ||| || ||||| || |||||||| | |||||||| ||||
Sbjct 2137 GCAACCTCTAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 2089
>seq3305
Length=19995
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619
|| |||| || || | ||| | || || ||||||||||||||||| ||||||| |||
Sbjct 16187 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 16128
Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668
|||||| ||| || ||||| || |||||||| | |||||||| ||||
Sbjct 16127 GCAACCTCTAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 16079
>seq8667
Length=9130
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619
|| |||| || || | ||| | || || ||||||||||||||||| ||||||| |||
Sbjct 4675 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 4616
Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668
|||||| || || ||||| || |||||||| | |||||||| ||||
Sbjct 4615 GCAACCTCCAATATTTGCACTGCTCAAGCACTTCCTGCTAATATTTCTG 4567
>seq3073
Length=20927
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619
|| |||| || || | ||| | || || ||||||||||||||||| ||||||| |||
Sbjct 18651 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 18710
Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668
|||||| || || ||||| || |||||||| | |||||||| ||||
Sbjct 18711 GCAACCTCCAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 18759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587858642634560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |