Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_015780.1
Length=205791
Score E
Sequences producing significant alignments: (Bits) Value
seq2750 87.8 2e-12
seq504 87.8 2e-12
seq1907 84.2 3e-11
>seq2750
Length=22288
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930
||||| |||| || || |||| |||||||||||||||||||| ||| || |||
Sbjct 19425 TGCGAGATGGCGACATTATTGTCTTCAATCGTCAACCAACATTACACAAAATGTCAATGA 19366
Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987
| | || | | |||| || | |||| ||||| | |||||||| | |
Sbjct 19365 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 19309
Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047
| | | |||| ||||| |||||||||||||||||||||||||||||| | || || ||||
Sbjct 19308 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCGCAATCGT 19249
Query 183048 ATGAAGCT 183055
||| ||
Sbjct 19248 TGGAAACT 19241
>seq504
Length=43960
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930
||||| |||| || || |||| |||||||||||||||||||| ||| || |||
Sbjct 9511 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 9452
Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987
| | || | | |||| || | |||| ||||| | |||||||| | |
Sbjct 9451 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 9395
Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047
| | | |||| ||||| |||||||||||||||||||||||||||||| | || || ||||
Sbjct 9394 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCGCAATCGT 9335
Query 183048 ATGAAGCT 183055
||| ||
Sbjct 9334 TGGAAACT 9327
>seq1907
Length=26802
Score = 84.2 bits (92), Expect = 3e-11
Identities = 133/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930
||||| |||| || || |||| |||||||||||||||||||| ||| || |||
Sbjct 18504 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 18445
Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987
| | || | | |||| || | |||| ||||| | |||||||| | |
Sbjct 18444 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 18388
Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047
| | | |||| ||||| |||||||||||||||||||||||||| ||| | || || ||||
Sbjct 18387 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATTTACCGCAATCGT 18328
Query 183048 ATGAAGCT 183055
||| ||
Sbjct 18327 TGGAAACT 18320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658187605872160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |