Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq2750 87.8 2e-12 seq504 87.8 2e-12 seq1907 84.2 3e-11 >seq2750 Length=22288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 19425 TGCGAGATGGCGACATTATTGTCTTCAATCGTCAACCAACATTACACAAAATGTCAATGA 19366 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 19365 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 19309 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||||||| | || || |||| Sbjct 19308 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCGCAATCGT 19249 Query 183048 ATGAAGCT 183055 ||| || Sbjct 19248 TGGAAACT 19241 >seq504 Length=43960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 9511 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 9452 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 9451 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 9395 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||||||| | || || |||| Sbjct 9394 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCGCAATCGT 9335 Query 183048 ATGAAGCT 183055 ||| || Sbjct 9334 TGGAAACT 9327 >seq1907 Length=26802 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 18504 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 18445 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 18444 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 18388 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||| ||| | || || |||| Sbjct 18387 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATTTACCGCAATCGT 18328 Query 183048 ATGAAGCT 183055 ||| || Sbjct 18327 TGGAAACT 18320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658187605872160