Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq13211 140 4e-28 seq1949 138 1e-27 seq8748 134 2e-26 seq6 123 3e-23 seq545 111 2e-19 seq4150 91.5 2e-13 seq3799 91.5 2e-13 seq4819 87.8 2e-12 seq2747 87.8 2e-12 >seq13211 Length=5644 Score = 140 bits (154), Expect = 4e-28 Identities = 320/484 (66%), Gaps = 51/484 (11%) Strand=Plus/Minus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| || Sbjct 4840 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 4781 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| |||||||| | ||| | |||||||||| | || ||||||||| Sbjct 4780 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 4721 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| |||| Sbjct 4720 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 4661 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 |||||||| ||||| |||||||||||||| || | |||||| ||| || |||| Sbjct 4660 GAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 4604 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTT------AACACATTC 37396 || || | || | |||| | |||||| || ||| || | || |||| Sbjct 4603 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 4545 Query 37397 AATTGT----TTCAA-----TTG--CTTTTAAGAGAAAGtttttttCTTCA-CT------ 37438 | | | || || ||| || |||| | ||| || |||| || | || Sbjct 4544 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCTAAAAAA 4485 Query 37439 -------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAG 37479 |||| | |||||||||||||||| | ||||||||| | Sbjct 4484 GGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 4425 Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAA 37539 | ||||||||||||||||| || ||||| ||||||||||| | ||| || | || ||||| Sbjct 4424 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAA 4365 Query 37540 CATC 37543 | || Sbjct 4364 CTTC 4361 >seq1949 Length=26475 Score = 138 bits (152), Expect = 1e-27 Identities = 320/480 (67%), Gaps = 48/480 (10%) Strand=Plus/Minus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| || Sbjct 12108 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 12049 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| |||||||| | ||| | |||||||| | | || ||||||||| Sbjct 12048 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTT 11989 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| |||| Sbjct 11988 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 11929 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 || ||||| ||||| |||||||| ||||| || | ||||||| ||| || |||| Sbjct 11928 GAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA---TGAAGCT 11872 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT--- 37399 || || | || | |||| | |||||| || ||| || | | | |||| Sbjct 11871 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTC 11813 Query 37400 ---TGT----TTCAA-----TTG--CTTTTAAGAGAAAGtttttt--tCT---------- 37433 | | || || ||| || |||| | ||| |||||| ||| Sbjct 11812 GAATATAGCATTAAACAACTTTGAACTATTAAAA-AAATTTTTTTAATCTAAAGAAGGAA 11754 Query 37434 -------TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTG 37483 ||| | |||| | |||||||||||||||| | ||||||||| || || Sbjct 11753 ATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATG 11694 Query 37484 AATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 ||||||||||||||| || ||||| ||||||||||| | |||||| | || |||||| || Sbjct 11693 AATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 11634 >seq8748 Length=9037 Score = 134 bits (148), Expect = 2e-26 Identities = 318/475 (67%), Gaps = 38/475 (8%) Strand=Plus/Minus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| || Sbjct 8730 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 8671 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| |||||||| | ||| | |||||||| | | || ||||||||| Sbjct 8670 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTT 8611 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| |||| Sbjct 8610 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 8551 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA---- 37342 || ||||| ||||| |||||||| ||||| || | |||||| ||| || | | Sbjct 8550 GAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCT 8491 Query 37343 --ACTATAA-TC------AGA----AATCCAtttttttGTC--------CAATCT-GCCT 37380 |||| | || ||| |||| |||||| | ||| || | | Sbjct 8490 TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAAT 8431 Query 37381 TTA--ATTTAACA-CATTCAATTGTTTCAA--TTGCTTTTAAG----AGAAAGttttttt 37431 || ||| |||| | || || | || || || |||||| |||| | | Sbjct 8430 ATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTTTAATCTGAAGAAGGAAATACC 8371 Query 37432 CTTCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 |||| | |||| | |||||||||||||||| | ||||||||| || ||||||| Sbjct 8370 GTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATAT 8311 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 |||||||||| || ||||| ||||||||||| | |||||| | || |||||| || Sbjct 8310 TTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 8256 >seq6 Length=123133 Score = 123 bits (136), Expect = 3e-23 Identities = 285/429 (66%), Gaps = 44/429 (10%) Strand=Plus/Plus Query 37155 TTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATC 37214 || |||| || || | |||||| |||||||| | ||| | |||||||| | | || Sbjct 115740 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 115799 Query 37215 AATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCT 37274 ||||||||| || | || ||||| ||||| | ||| || | |||||| ||||| Sbjct 115800 AATTCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 115859 Query 37275 GCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCG 37334 |||||| |||||| ||||| ||||| ||||||| ||||| || | |||||| ||| Sbjct 115860 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCA 115919 Query 37335 AAAGTTGAA----CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA- 37389 || |||| || || | || | |||| | ||| || || ||| || | Sbjct 115920 AA---TGAAGCTTCTTTACT-AGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGAT 115975 Query 37390 -----CACATTCAATTGT----TTCAATTGCTTTTAAG----AGAAAGtttttt--tCT- 37433 || |||||| | | || || |||| || | ||| |||||| ||| Sbjct 115976 AAAATCAAATTCAAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTAATCTA 116035 Query 37434 ----------------TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 ||| | |||| | |||||||||||||||| | |||||| Sbjct 116036 AAAAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACAT 116095 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||| || ||||||||||||||||| || ||||| ||||||||||| | |||||| | || Sbjct 116096 TTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTAT 116155 Query 37535 TTGAACATC 37543 |||||| || Sbjct 116156 TTGAACTTC 116164 >seq545 Length=42957 Score = 111 bits (122), Expect = 2e-19 Identities = 312/485 (64%), Gaps = 52/485 (11%) Strand=Plus/Minus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| | Sbjct 28664 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGCTGG 28605 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | || ||| |||||||| | ||| | |||||||||| | || ||||||||| Sbjct 28604 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 28545 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| |||| | ||| || | |||||| ||||| |||||| |||| Sbjct 28544 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 28485 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 || ||||| ||||| ||||| || ||||| || | |||||| ||| || |||| Sbjct 28484 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 28428 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA------CACATTC 37396 || || | || | |||| | |||||| || ||| || | || |||| Sbjct 28427 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 28369 Query 37397 AATTGT----TTCAATTGCTTT-------TAAGAGAAAGtttttttCTTCACT------- 37438 | | | || ||| |||| ||| | ||| | ||||| || | | Sbjct 28368 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATTTAAAGA 28309 Query 37439 --------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCA 37478 |||| | |||||||||||||||| | ||||||||| Sbjct 28308 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 28249 Query 37479 GAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGA 37538 || ||||||||||||||||| || ||||| ||||||||||| | ||| || | || |||| Sbjct 28248 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGA 28189 Query 37539 ACATC 37543 || || Sbjct 28188 ACTTC 28184 >seq4150 Length=17270 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 7996 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 7937 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411 |||||||| |||| |||| |||| |||||||| || || ||| | ||| ||| | Sbjct 7936 TGGATTGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 7877 Query 153412 GTATAGCTAATGAACTAACTAAAATATTTA 153441 | ||||| ||| | | ||||| |||| Sbjct 7876 GCCTAGCTTGGGAATTTAACAAAATTTTTA 7847 >seq3799 Length=18352 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 4851 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 4910 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391 |||||||| |||| ||||| |||| |||||||| || || Sbjct 4911 TGGATTGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 4950 >seq4819 Length=15377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 3982 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 3923 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411 |||||||| ||| |||| |||| |||||||| || || ||| | ||| ||| | Sbjct 3922 TGGATTGGCAATCTTTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 3863 Query 153412 GTATAGCT 153419 || ||||| Sbjct 3862 GTCTAGCT 3855 >seq2747 Length=22298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 13317 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 13376 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411 |||||||| ||| |||| |||| |||||||| || || ||| | ||| ||| | Sbjct 13377 TGGATTGGCAATCTTTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 13436 Query 153412 GTATAGCT 153419 || ||||| Sbjct 13437 GTCTAGCT 13444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592122845863840