Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 140 4e-28
seq1949 138 1e-27
seq8748 134 2e-26
seq6 123 3e-23
seq545 111 2e-19
seq4150 91.5 2e-13
seq3799 91.5 2e-13
seq4819 87.8 2e-12
seq2747 87.8 2e-12
>seq13211
Length=5644
Score = 140 bits (154), Expect = 4e-28
Identities = 320/484 (66%), Gaps = 51/484 (11%)
Strand=Plus/Minus
Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166
||||| ||| || ||| | ||||| ||| | | |||| || || |||| ||
Sbjct 4840 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 4781
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|| | |||||| |||||||| | ||| | |||||||||| | || |||||||||
Sbjct 4780 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 4721
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| ||||
Sbjct 4720 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 4661
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343
|||||||| ||||| |||||||||||||| || | |||||| ||| || ||||
Sbjct 4660 GAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 4604
Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTT------AACACATTC 37396
|| || | || | |||| | |||||| || ||| || | || ||||
Sbjct 4603 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 4545
Query 37397 AATTGT----TTCAA-----TTG--CTTTTAAGAGAAAGtttttttCTTCA-CT------ 37438
| | | || || ||| || |||| | ||| || |||| || | ||
Sbjct 4544 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCTAAAAAA 4485
Query 37439 -------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAG 37479
|||| | |||||||||||||||| | ||||||||| |
Sbjct 4484 GGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 4425
Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAA 37539
| ||||||||||||||||| || ||||| ||||||||||| | ||| || | || |||||
Sbjct 4424 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAA 4365
Query 37540 CATC 37543
| ||
Sbjct 4364 CTTC 4361
>seq1949
Length=26475
Score = 138 bits (152), Expect = 1e-27
Identities = 320/480 (67%), Gaps = 48/480 (10%)
Strand=Plus/Minus
Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166
||||| ||| || ||| | ||||| ||| | | |||| || || |||| ||
Sbjct 12108 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 12049
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|| | |||||| |||||||| | ||| | |||||||| | | || |||||||||
Sbjct 12048 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTT 11989
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| ||||
Sbjct 11988 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 11929
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343
|| ||||| ||||| |||||||| ||||| || | ||||||| ||| || ||||
Sbjct 11928 GAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA---TGAAGCT 11872
Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT--- 37399
|| || | || | |||| | |||||| || ||| || | | | ||||
Sbjct 11871 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTC 11813
Query 37400 ---TGT----TTCAA-----TTG--CTTTTAAGAGAAAGtttttt--tCT---------- 37433
| | || || ||| || |||| | ||| |||||| |||
Sbjct 11812 GAATATAGCATTAAACAACTTTGAACTATTAAAA-AAATTTTTTTAATCTAAAGAAGGAA 11754
Query 37434 -------TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTG 37483
||| | |||| | |||||||||||||||| | ||||||||| || ||
Sbjct 11753 ATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATG 11694
Query 37484 AATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543
||||||||||||||| || ||||| ||||||||||| | |||||| | || |||||| ||
Sbjct 11693 AATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 11634
>seq8748
Length=9037
Score = 134 bits (148), Expect = 2e-26
Identities = 318/475 (67%), Gaps = 38/475 (8%)
Strand=Plus/Minus
Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166
||||| ||| || ||| | ||||| ||| | | |||| || || |||| ||
Sbjct 8730 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 8671
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|| | |||||| |||||||| | ||| | |||||||| | | || |||||||||
Sbjct 8670 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTT 8611
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| ||||
Sbjct 8610 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 8551
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA---- 37342
|| ||||| ||||| |||||||| ||||| || | |||||| ||| || | |
Sbjct 8550 GAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCT 8491
Query 37343 --ACTATAA-TC------AGA----AATCCAtttttttGTC--------CAATCT-GCCT 37380
|||| | || ||| |||| |||||| | ||| || | |
Sbjct 8490 TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAAT 8431
Query 37381 TTA--ATTTAACA-CATTCAATTGTTTCAA--TTGCTTTTAAG----AGAAAGttttttt 37431
|| ||| |||| | || || | || || || |||||| |||| | |
Sbjct 8430 ATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTTTAATCTGAAGAAGGAAATACC 8371
Query 37432 CTTCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488
|||| | |||| | |||||||||||||||| | ||||||||| || |||||||
Sbjct 8370 GTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATAT 8311
Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543
|||||||||| || ||||| ||||||||||| | |||||| | || |||||| ||
Sbjct 8310 TTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 8256
>seq6
Length=123133
Score = 123 bits (136), Expect = 3e-23
Identities = 285/429 (66%), Gaps = 44/429 (10%)
Strand=Plus/Plus
Query 37155 TTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATC 37214
|| |||| || || | |||||| |||||||| | ||| | |||||||| | | ||
Sbjct 115740 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 115799
Query 37215 AATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCT 37274
||||||||| || | || ||||| ||||| | ||| || | |||||| |||||
Sbjct 115800 AATTCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 115859
Query 37275 GCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCG 37334
|||||| |||||| ||||| ||||| ||||||| ||||| || | |||||| |||
Sbjct 115860 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCA 115919
Query 37335 AAAGTTGAA----CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA- 37389
|| |||| || || | || | |||| | ||| || || ||| || |
Sbjct 115920 AA---TGAAGCTTCTTTACT-AGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGAT 115975
Query 37390 -----CACATTCAATTGT----TTCAATTGCTTTTAAG----AGAAAGtttttt--tCT- 37433
|| |||||| | | || || |||| || | ||| |||||| |||
Sbjct 115976 AAAATCAAATTCAAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTAATCTA 116035
Query 37434 ----------------TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474
||| | |||| | |||||||||||||||| | ||||||
Sbjct 116036 AAAAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACAT 116095
Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534
||| || ||||||||||||||||| || ||||| ||||||||||| | |||||| | ||
Sbjct 116096 TTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTAT 116155
Query 37535 TTGAACATC 37543
|||||| ||
Sbjct 116156 TTGAACTTC 116164
>seq545
Length=42957
Score = 111 bits (122), Expect = 2e-19
Identities = 312/485 (64%), Gaps = 52/485 (11%)
Strand=Plus/Minus
Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166
||||| ||| || ||| | ||||| ||| | | |||| || || |||| |
Sbjct 28664 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGCTGG 28605
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|| | || ||| |||||||| | ||| | |||||||||| | || |||||||||
Sbjct 28604 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 28545
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| | ||| ||||| |||| | ||| || | |||||| ||||| |||||| ||||
Sbjct 28544 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 28485
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343
|| ||||| ||||| ||||| || ||||| || | |||||| ||| || ||||
Sbjct 28484 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 28428
Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA------CACATTC 37396
|| || | || | |||| | |||||| || ||| || | || ||||
Sbjct 28427 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 28369
Query 37397 AATTGT----TTCAATTGCTTT-------TAAGAGAAAGtttttttCTTCACT------- 37438
| | | || ||| |||| ||| | ||| | ||||| || | |
Sbjct 28368 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATTTAAAGA 28309
Query 37439 --------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCA 37478
|||| | |||||||||||||||| | |||||||||
Sbjct 28308 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 28249
Query 37479 GAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGA 37538
|| ||||||||||||||||| || ||||| ||||||||||| | ||| || | || ||||
Sbjct 28248 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGA 28189
Query 37539 ACATC 37543
|| ||
Sbjct 28188 ACTTC 28184
>seq4150
Length=17270
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351
|||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| ||||||||
Sbjct 7996 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 7937
Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411
|||||||| |||| |||| |||| |||||||| || || ||| | ||| ||| |
Sbjct 7936 TGGATTGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 7877
Query 153412 GTATAGCTAATGAACTAACTAAAATATTTA 153441
| ||||| ||| | | ||||| ||||
Sbjct 7876 GCCTAGCTTGGGAATTTAACAAAATTTTTA 7847
>seq3799
Length=18352
Score = 91.5 bits (100), Expect = 2e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351
|||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| ||||||||
Sbjct 4851 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 4910
Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391
|||||||| |||| ||||| |||| |||||||| || ||
Sbjct 4911 TGGATTGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 4950
>seq4819
Length=15377
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351
|||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| ||||||||
Sbjct 3982 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 3923
Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411
|||||||| ||| |||| |||| |||||||| || || ||| | ||| ||| |
Sbjct 3922 TGGATTGGCAATCTTTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 3863
Query 153412 GTATAGCT 153419
|| |||||
Sbjct 3862 GTCTAGCT 3855
>seq2747
Length=22298
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351
|||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| ||||||||
Sbjct 13317 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 13376
Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411
|||||||| ||| |||| |||| |||||||| || || ||| | ||| ||| |
Sbjct 13377 TGGATTGGCAATCTTTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 13436
Query 153412 GTATAGCT 153419
|| |||||
Sbjct 13437 GTCTAGCT 13444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592122845863840
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