Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20290 84.2 2e-11 seq10756 84.2 2e-11 seq5662 84.2 2e-11 seq3835 84.2 2e-11 seq422 84.2 2e-11 >seq20290 Length=3127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 782 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 723 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 722 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 663 Query 48762 TGCATC 48767 |||||| Sbjct 662 TGCATC 657 >seq10756 Length=7202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 4741 CGCTGTTGATCCGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 4800 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || || ||||| || || | |||||| || ||||| || |||||||| ||||||||| Sbjct 4801 GTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTTTTGACAAAAATC 4860 Query 48762 TGCATC 48767 |||||| Sbjct 4861 TGCATC 4866 >seq5662 Length=13541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 7310 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 7251 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 7250 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 7191 Query 48762 TGCATC 48767 |||||| Sbjct 7190 TGCATC 7185 >seq3835 Length=18222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 17938 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 17879 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 17878 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 17819 Query 48762 TGCATC 48767 |||||| Sbjct 17818 TGCATC 17813 >seq422 Length=46818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 44377 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 44318 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 44317 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 44258 Query 48762 TGCATC 48767 |||||| Sbjct 44257 TGCATC 44252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380815980433308