Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq22837 93.3 5e-14 seq3305 93.3 5e-14 seq8667 89.7 6e-13 seq3073 89.7 6e-13 seq6114 84.2 3e-11 seq3570 84.2 3e-11 seq12644 82.4 9e-11 >seq22837 Length=2556 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || ||| ||||||||| ||||||| Sbjct 2089 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTAGAGGTTGCTTTATCTCTTC 2148 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 2149 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 2197 >seq3305 Length=19995 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || ||| ||||||||| ||||||| Sbjct 16079 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTAGAGGTTGCTTTATCTCTTC 16138 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 16139 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 16187 >seq8667 Length=9130 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 4567 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 4626 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 4627 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 4675 >seq3073 Length=20927 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 18759 CAGAAATATTAGCAGGAAGTGCTTGGGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 18700 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||||||||||||||| || | ||| | || ||| ||| || Sbjct 18699 GAATATGCTGCTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 18651 >seq6114 Length=12706 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 744 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 803 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 804 GAATATGCTGTTCTCTAGTTTGAAGAGTTAAACGATAAGCAATATTTCC 852 >seq3570 Length=19118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 1875 CAGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTC 1816 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 1815 GAATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 1767 >seq12644 Length=5949 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 139295 AGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCT 139354 ||| ||||| || | |||||||| || ||||| || || ||||||||| ||||||| Sbjct 4312 AGAAATATTAGCAGGAAGTGCTTGAGCAGTGCAAATATTGGAGGTTGCTTTATCTCTTCG 4253 Query 139355 AATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCC 139402 ||||||||| ||||||||||| || | ||| | || ||| ||| || Sbjct 4252 AATATGCTGTTCTCTAGTTTGGAGAGTTAAACGATAAGCAATATTTCC 4205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578808806973920