Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4800 98.7 1e-15 seq11821 95.1 2e-14 seq7380 89.7 7e-13 seq1236 89.7 7e-13 >seq4800 Length=15438 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| |||||||||||||| |||||||| | ||||| | || | |||||| ||| Sbjct 5975 TTTCCTGTAGCAATAACAAAATCGTCAGGTTCATTATGTTGTAATATCATCCACATTGCC 6034 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904 || ||||| || | ||||||||||| |||||| | |||| | ||| |||| | | | Sbjct 6035 TCAACATATTCCCGAGCATGTCCCCAATCACGACGAGCATTTATATTACCTAATTCAATA 6094 Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAA--TGCTCTTGTAATCTTACGAGTTACAA 47962 | | ||||| || || | | ||| | | |||| || || || | ||||||| Sbjct 6095 AATTGTTGCTGG--TTAAGTGCTATTTTTGCAACTCCTCTAGTTATTTTTCTTGTTACAA 6152 Query 47963 AAGTTTCACC 47972 ||||||| || Sbjct 6153 AAGTTTCCCC 6162 >seq11821 Length=6471 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| |||||||||||||||||||| || | ||||| | || | |||||| ||| Sbjct 2439 TTTCCTGTAGCAATAACAAAATCATCAGGCTCATTATGTTGTAATATCATCCACATTGCC 2380 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896 || ||||| || | ||||||||||| ||||| | |||| | ||| |||| Sbjct 2379 TCAACATATTCCCGAGCATGTCCCCAATCACGGCGAGCATTTATATTACCTA 2328 >seq7380 Length=10708 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| || |||||||||||||||||||| | ||||| | || | |||||| ||| Sbjct 10340 TTTCCTGTAGCGATAACAAAATCATCAGGTTCATTATGTTGTAATATCATCCACATTGCC 10281 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896 || ||||| || | ||||| ||||| ||||| | |||| | ||| |||| Sbjct 10280 TCAACATATTCCCGAGCATGCCCCCAATCACGGCGAGCATTTATATTACCTA 10229 >seq1236 Length=31820 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| || |||||||||||||||||||| | ||||| | || | |||||| ||| Sbjct 23368 TTTCCTGTAGCGATAACAAAATCATCAGGTTCATTATGTTGTAATATCATCCACATTGCC 23427 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896 || ||||| || | ||||| ||||| ||||| | |||| | ||| |||| Sbjct 23428 TCAACATATTCCCGAGCATGCCCCCAATCACGGCGAGCATTTATATTACCTA 23479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665276483858720