Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq4800 98.7 1e-15
seq11821 95.1 2e-14
seq7380 89.7 7e-13
seq1236 89.7 7e-13
>seq4800
Length=15438
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844
|||||||| |||||||||||||| |||||||| | ||||| | || | |||||| |||
Sbjct 5975 TTTCCTGTAGCAATAACAAAATCGTCAGGTTCATTATGTTGTAATATCATCCACATTGCC 6034
Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904
|| ||||| || | ||||||||||| |||||| | |||| | ||| |||| | | |
Sbjct 6035 TCAACATATTCCCGAGCATGTCCCCAATCACGACGAGCATTTATATTACCTAATTCAATA 6094
Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAA--TGCTCTTGTAATCTTACGAGTTACAA 47962
| | ||||| || || | | ||| | | |||| || || || | |||||||
Sbjct 6095 AATTGTTGCTGG--TTAAGTGCTATTTTTGCAACTCCTCTAGTTATTTTTCTTGTTACAA 6152
Query 47963 AAGTTTCACC 47972
||||||| ||
Sbjct 6153 AAGTTTCCCC 6162
>seq11821
Length=6471
Score = 95.1 bits (104), Expect = 2e-14
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844
|||||||| |||||||||||||||||||| || | ||||| | || | |||||| |||
Sbjct 2439 TTTCCTGTAGCAATAACAAAATCATCAGGCTCATTATGTTGTAATATCATCCACATTGCC 2380
Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896
|| ||||| || | ||||||||||| ||||| | |||| | ||| ||||
Sbjct 2379 TCAACATATTCCCGAGCATGTCCCCAATCACGGCGAGCATTTATATTACCTA 2328
>seq7380
Length=10708
Score = 89.7 bits (98), Expect = 7e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844
|||||||| || |||||||||||||||||||| | ||||| | || | |||||| |||
Sbjct 10340 TTTCCTGTAGCGATAACAAAATCATCAGGTTCATTATGTTGTAATATCATCCACATTGCC 10281
Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896
|| ||||| || | ||||| ||||| ||||| | |||| | ||| ||||
Sbjct 10280 TCAACATATTCCCGAGCATGCCCCCAATCACGGCGAGCATTTATATTACCTA 10229
>seq1236
Length=31820
Score = 89.7 bits (98), Expect = 7e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844
|||||||| || |||||||||||||||||||| | ||||| | || | |||||| |||
Sbjct 23368 TTTCCTGTAGCGATAACAAAATCATCAGGTTCATTATGTTGTAATATCATCCACATTGCC 23427
Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTA 47896
|| ||||| || | ||||| ||||| ||||| | |||| | ||| ||||
Sbjct 23428 TCAACATATTCCCGAGCATGCCCCCAATCACGGCGAGCATTTATATTACCTA 23479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665276483858720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |