Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq865 109 7e-19
seq21 104 3e-17
seq668 102 1e-16
seq554 93.3 5e-14
seq5477 86.0 7e-12
>seq865
Length=36480
Score = 109 bits (120), Expect = 7e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964
|| ||||||| ||||||||| | ||||| ||||||||||| | || ||||||||
Sbjct 32827 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 32768
Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024
|||||||||||||| || ||||||||||||| || |||||| | || || || |
Sbjct 32767 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCTCCT 32708
Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059
|| || |||||||||||||||| || || ||
Sbjct 32707 GAAGAAGTTTCTGTTTGCAATTTGGCTTCGATTGC 32673
>seq21
Length=96658
Score = 104 bits (114), Expect = 3e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964
|| ||||| | || |||||| | ||||| ||||||||||| | || ||||||||
Sbjct 29880 GAAACTGGTATTCCCTATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 29939
Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024
|||||||||||||| || ||||||||||||| || |||||| | || || ||
Sbjct 29940 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCGCCT 29999
Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059
|| ||| |||||||||||||||| ||||| ||
Sbjct 30000 GAAGAGGTTTCTGTTTGCAATTTGGCTTCAATTGC 30034
>seq668
Length=40291
Score = 102 bits (112), Expect = 1e-16
Identities = 119/158 (75%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964
|| ||||||| ||||||||| | ||||| ||||||||||| | || ||||||||
Sbjct 26910 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 26851
Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024
|||||||||||||| || ||||||||||||| || |||||| | || || || | |
Sbjct 26850 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 26794
Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059
|| ||| | ||||||| |||||||| || || ||
Sbjct 26793 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 26756
>seq554
Length=42686
Score = 93.3 bits (102), Expect = 5e-14
Identities = 117/158 (74%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964
|| ||||||| || |||||| | || || ||||||||||| | || ||||||||
Sbjct 13266 GAAACTGGAATTCCCTATATGGTCTATAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 13207
Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024
|||||||||||||| || ||||||||||||| || |||||| | || || || | |
Sbjct 13206 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 13150
Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059
|| ||| | ||||||| |||||||| || || ||
Sbjct 13149 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 13112
>seq5477
Length=13945
Score = 86.0 bits (94), Expect = 7e-12
Identities = 147/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353
|| || |||||| | ||| ||||| || || || || | || ||| ||| | ||
Sbjct 2291 GGTGCTCTTCTCACTGGTCCACCAGGAACTGGCAAAACTTTACTTGCCAAAGCAACGGCA 2232
Query 175354 GGTGAATCAAATGTCCCATTCATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGT 175412
|| || | ||||| || |||||| | || | ||| | || | || | |||||||||||
Sbjct 2231 GGAGAGGCTAATGTACCTTTCATC-ACTGTTTCTGGCTCAGAATTCCTTGAGATGTTTGT 2173
Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA-AAATCAACCAT 175471
|||||| || || | | || | ||| | || ||||| || || | |||||| || |
Sbjct 2172 TGGTGTTGGCCCCGGACGTGTGAGGGATATGTTCGAAATGGCACGAAAGAAATCA-CCTT 2114
Query 175472 GTATTGTCTTCATTGATGAGATTGATGC 175499
||||| | || |||||||||||||||||
Sbjct 2113 GTATTCTTTTTATTGATGAGATTGATGC 2086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596374253284480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |