Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq865 109 7e-19 seq21 104 3e-17 seq668 102 1e-16 seq554 93.3 5e-14 seq5477 86.0 7e-12 >seq865 Length=36480 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| ||||||||| | ||||| ||||||||||| | || |||||||| Sbjct 32827 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 32768 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | Sbjct 32767 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCTCCT 32708 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 || || |||||||||||||||| || || || Sbjct 32707 GAAGAAGTTTCTGTTTGCAATTTGGCTTCGATTGC 32673 >seq21 Length=96658 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| | || |||||| | ||||| ||||||||||| | || |||||||| Sbjct 29880 GAAACTGGTATTCCCTATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 29939 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || Sbjct 29940 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACTTCGCCT 29999 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| |||||||||||||||| ||||| || Sbjct 30000 GAAGAGGTTTCTGTTTGCAATTTGGCTTCAATTGC 30034 >seq668 Length=40291 Score = 102 bits (112), Expect = 1e-16 Identities = 119/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| ||||||||| | ||||| ||||||||||| | || |||||||| Sbjct 26910 GAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 26851 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | | Sbjct 26850 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 26794 Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| | ||||||| |||||||| || || || Sbjct 26793 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 26756 >seq554 Length=42686 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||||| || |||||| | || || ||||||||||| | || |||||||| Sbjct 13266 GAAACTGGAATTCCCTATATGGTCTATAAAGATGCTTGTAATAGTAAATCAAACCAAAAA 13207 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 |||||||||||||| || ||||||||||||| || |||||| | || || || | | Sbjct 13206 AATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATAC---TTCG 13150 Query 76025 GATG-AGACG--GCTGTTTGCAATTTGGCATCAATCGC 76059 || ||| | ||||||| |||||||| || || || Sbjct 13149 CCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGATTGC 13112 >seq5477 Length=13945 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353 || || |||||| | ||| ||||| || || || || | || ||| ||| | || Sbjct 2291 GGTGCTCTTCTCACTGGTCCACCAGGAACTGGCAAAACTTTACTTGCCAAAGCAACGGCA 2232 Query 175354 GGTGAATCAAATGTCCCATTCATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGT 175412 || || | ||||| || |||||| | || | ||| | || | || | ||||||||||| Sbjct 2231 GGAGAGGCTAATGTACCTTTCATC-ACTGTTTCTGGCTCAGAATTCCTTGAGATGTTTGT 2173 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA-AAATCAACCAT 175471 |||||| || || | | || | ||| | || ||||| || || | |||||| || | Sbjct 2172 TGGTGTTGGCCCCGGACGTGTGAGGGATATGTTCGAAATGGCACGAAAGAAATCA-CCTT 2114 Query 175472 GTATTGTCTTCATTGATGAGATTGATGC 175499 ||||| | || ||||||||||||||||| Sbjct 2113 GTATTCTTTTTATTGATGAGATTGATGC 2086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596374253284480