Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18229 105 1e-17 seq16001 105 1e-17 seq12421 105 1e-17 seq91 105 1e-17 seq10671 95.1 2e-14 seq13147 93.3 8e-14 seq11515 93.3 8e-14 seq856 93.3 8e-14 seq659 91.5 3e-13 >seq18229 Length=3682 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 1766 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1707 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647 Query 193358 CATTTT 193363 ||| || Sbjct 1646 CATATT 1641 >seq16001 Length=4432 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 2075 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 2016 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956 Query 193358 CATTTT 193363 ||| || Sbjct 1955 CATATT 1950 >seq12421 Length=6087 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 1092 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1033 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973 Query 193358 CATTTT 193363 ||| || Sbjct 972 CATATT 967 >seq91 Length=67459 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||||||||| ||||| | || | ||| ||| || Sbjct 15191 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 15132 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| |||||| || ||||| |||||||| || || || || |||||||| || || Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072 Query 193358 CATTTT 193363 ||| || Sbjct 15071 CATATT 15066 >seq10671 Length=7258 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 |||| || | ||| ||||| || || || || || || ||||| ||||||| || | | Sbjct 4125 AAAACCAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACA 4066 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 ||| ||| || || || | ||||||||| ||||||||||| || || || || ||||| Sbjct 4065 TTTTCAATCGTGTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTG 4006 Query 193347 ACAAATATTTGCATT 193361 ||||| || |||||| Sbjct 4005 ACAAAGATCTGCATT 3991 >seq13147 Length=5676 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | |||| Sbjct 5224 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 5283 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| ||| ||||| ||||| || ||||| || || || || || || || Sbjct 5284 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 5343 Query 193353 ATTTGCATTTT 193363 || ||||| || Sbjct 5344 ATCTGCATATT 5354 >seq11515 Length=6677 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | |||| Sbjct 4807 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 4748 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| ||| ||||| ||||| || ||||| || || || || || || || Sbjct 4747 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 4688 Query 193353 ATTTGCATTTT 193363 || ||||| || Sbjct 4687 ATCTGCATATT 4677 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 5419 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 5360 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| ||||| || |||| |||||||| || || || || || || || || || Sbjct 5359 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 5300 Query 193343 TTTTACAAATATTTGCAT 193360 || || || || ||||| Sbjct 5299 CTTAACTAAAATCTGCAT 5282 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 5089 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 5030 Query 193283 TA-TATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCG 193341 | ||| ||||| || |||| |||||||| || || || || || || || || | Sbjct 5029 GACGTTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAG 4970 Query 193342 TTTTTACAAATATTTGCAT 193360 | || ||||| || ||||| Sbjct 4969 TCTTAACAAAAATCTGCAT 4951 >seq856 Length=36659 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | |||| Sbjct 4864 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 4805 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| ||| ||||| ||||| || ||||| || || || || || || || Sbjct 4804 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 4745 Query 193353 ATTTGCATTTT 193363 || ||||| || Sbjct 4744 ATCTGCATATT 4734 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 || ||||| |||| || ||||||||||| |||||||| |||||||| || |||| || Sbjct 5146 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 5087 Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342 | ||| ||||| || |||| |||||||| || || || || || || || || || Sbjct 5086 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 5027 Query 193343 TTTTACAAATATTTGCAT 193360 || || || || ||||| Sbjct 5026 CTTAACGAAAATCTGCAT 5009 >seq659 Length=40447 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292 |||| || ||||||||||| ||||||||||| || || || |||| || | ||| | Sbjct 37872 AATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCA 37931 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 || ||||| |||| || ||||||||||| || || || || || || || || ||||| Sbjct 37932 ATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 37991 Query 193353 ATTTGCAT 193360 || ||||| Sbjct 37992 ATCTGCAT 37999 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 |||| |||| ||| ||||||||||| || ||||| || ||||| ||||| | || | Sbjct 38408 AAAACCAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACG 38467 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 ||| || ||||| |||| ||| ||||| ||||| || ||||| || || || || || Sbjct 38468 TTTTCGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTG 38527 Query 193347 ACAAATATTTGCATTTT 193363 || || || ||||| || Sbjct 38528 ACGAAGATCTGCATATT 38544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899359808166720