Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq18229 105 1e-17
seq16001 105 1e-17
seq12421 105 1e-17
seq91 105 1e-17
seq10671 95.1 2e-14
seq13147 93.3 8e-14
seq11515 93.3 8e-14
seq856 93.3 8e-14
seq659 91.5 3e-13
>seq18229
Length=3682
Score = 105 bits (116), Expect = 1e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|||||||||||| || || || ||||||||||| ||||| | || | ||| ||| ||
Sbjct 1766 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1707
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| |||| |||||| || ||||| |||||||| || || || || |||||||| || ||
Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647
Query 193358 CATTTT 193363
||| ||
Sbjct 1646 CATATT 1641
>seq16001
Length=4432
Score = 105 bits (116), Expect = 1e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|||||||||||| || || || ||||||||||| ||||| | || | ||| ||| ||
Sbjct 2075 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 2016
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| |||| |||||| || ||||| |||||||| || || || || |||||||| || ||
Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956
Query 193358 CATTTT 193363
||| ||
Sbjct 1955 CATATT 1950
>seq12421
Length=6087
Score = 105 bits (116), Expect = 1e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|||||||||||| || || || ||||||||||| ||||| | || | ||| ||| ||
Sbjct 1092 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1033
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| |||| |||||| || ||||| |||||||| || || || || |||||||| || ||
Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973
Query 193358 CATTTT 193363
||| ||
Sbjct 972 CATATT 967
>seq91
Length=67459
Score = 105 bits (116), Expect = 1e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|||||||||||| || || || ||||||||||| ||||| | || | ||| ||| ||
Sbjct 15191 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 15132
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
||| |||| |||||| || ||||| |||||||| || || || || |||||||| || ||
Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072
Query 193358 CATTTT 193363
||| ||
Sbjct 15071 CATATT 15066
>seq10671
Length=7258
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286
|||| || | ||| ||||| || || || || || || ||||| ||||||| || | |
Sbjct 4125 AAAACCAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACA 4066
Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346
||| ||| || || || | ||||||||| ||||||||||| || || || || |||||
Sbjct 4065 TTTTCAATCGTGTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTG 4006
Query 193347 ACAAATATTTGCATT 193361
||||| || ||||||
Sbjct 4005 ACAAAGATCTGCATT 3991
>seq13147
Length=5676
Score = 93.3 bits (102), Expect = 8e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292
|||| ||| ||||||||||| || ||||| || ||||| ||||| | || | ||||
Sbjct 5224 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 5283
Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352
|| ||||| |||| ||| ||||| ||||| || ||||| || || || || || || ||
Sbjct 5284 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 5343
Query 193353 ATTTGCATTTT 193363
|| ||||| ||
Sbjct 5344 ATCTGCATATT 5354
>seq11515
Length=6677
Score = 93.3 bits (102), Expect = 8e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292
|||| ||| ||||||||||| || ||||| || ||||| ||||| | || | ||||
Sbjct 4807 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 4748
Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352
|| ||||| |||| ||| ||||| ||||| || ||||| || || || || || || ||
Sbjct 4747 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 4688
Query 193353 ATTTGCATTTT 193363
|| ||||| ||
Sbjct 4687 ATCTGCATATT 4677
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282
|| ||||| |||| || ||||||||||| |||||||| |||||||| || |||| ||
Sbjct 5419 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 5360
Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342
| ||| ||||| || |||| |||||||| || || || || || || || || ||
Sbjct 5359 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 5300
Query 193343 TTTTACAAATATTTGCAT 193360
|| || || || |||||
Sbjct 5299 CTTAACTAAAATCTGCAT 5282
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/139 (74%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282
|| ||||| |||| || ||||||||||| |||||||| |||||||| || |||| ||
Sbjct 5089 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 5030
Query 193283 TA-TATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCG 193341
| ||| ||||| || |||| |||||||| || || || || || || || || |
Sbjct 5029 GACGTTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAG 4970
Query 193342 TTTTTACAAATATTTGCAT 193360
| || ||||| || |||||
Sbjct 4969 TCTTAACAAAAATCTGCAT 4951
>seq856
Length=36659
Score = 93.3 bits (102), Expect = 8e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292
|||| ||| ||||||||||| || ||||| || ||||| ||||| | || | ||||
Sbjct 4864 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 4805
Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352
|| ||||| |||| ||| ||||| ||||| || ||||| || || || || || || ||
Sbjct 4804 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 4745
Query 193353 ATTTGCATTTT 193363
|| ||||| ||
Sbjct 4744 ATCTGCATATT 4734
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 193223 GGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTT 193282
|| ||||| |||| || ||||||||||| |||||||| |||||||| || |||| ||
Sbjct 5146 GGGAAAAACCAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTT 5087
Query 193283 TATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGT 193342
| ||| ||||| || |||| |||||||| || || || || || || || || ||
Sbjct 5086 GACGTTTTCGATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGT 5027
Query 193343 TTTTACAAATATTTGCAT 193360
|| || || || |||||
Sbjct 5026 CTTAACGAAAATCTGCAT 5009
>seq659
Length=40447
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 193233 AATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAA 193292
|||| || ||||||||||| ||||||||||| || || || |||| || | ||| |
Sbjct 37872 AATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCA 37931
Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352
|| ||||| |||| || ||||||||||| || || || || || || || || |||||
Sbjct 37932 ATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 37991
Query 193353 ATTTGCAT 193360
|| |||||
Sbjct 37992 ATCTGCAT 37999
Score = 89.7 bits (98), Expect = 9e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286
|||| |||| ||| ||||||||||| || ||||| || ||||| ||||| | || |
Sbjct 38408 AAAACCAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACG 38467
Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346
||| || ||||| |||| ||| ||||| ||||| || ||||| || || || || ||
Sbjct 38468 TTTTCGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTG 38527
Query 193347 ACAAATATTTGCATTTT 193363
|| || || ||||| ||
Sbjct 38528 ACGAAGATCTGCATATT 38544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899359808166720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |