Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq13211 100 4e-16 seq6 95.1 2e-14 seq8748 91.5 2e-13 seq1949 91.5 2e-13 seq545 86.0 9e-12 seq659 84.2 3e-11 >seq13211 Length=5644 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||||| || |||||||| ||||| || Sbjct 4775 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4716 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| | ||| | ||| ||||||||||| || | || ||||| | |||||| Sbjct 4715 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4656 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 4655 GAATATACCCTCAAC 4641 >seq6 Length=123133 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||| | || |||||||| ||||| || Sbjct 115757 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 115816 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | ||| ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 115817 CAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 115876 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 115877 GAATATACCCTCAAC 115891 >seq8748 Length=9037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||| | || |||||||| ||||| || Sbjct 8665 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 8606 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 8605 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 8546 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 8545 GAATATACCCTCAAC 8531 >seq1949 Length=26475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| |||||||| || | |||||||| | || |||||||| ||||| || Sbjct 12043 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 11984 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 11983 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 11924 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 11923 GAATATACCCTCAAC 11909 >seq545 Length=42957 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 || ||| |||||||| || | |||||||||| || |||||||| ||||| || Sbjct 28599 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 28540 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 | || ||||| ||| | ||| ||||||||||| || | || ||||| | ||| || Sbjct 28539 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 28480 Query 18274 GAATATACCCTCAAC 18288 ||||||||||||||| Sbjct 28479 GAATATACCCTCAAC 28465 >seq659 Length=40447 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | || || | ||||||||||| || || | |||||||| | | Sbjct 38544 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 38485 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| || ||||||||| ||||| ||||| || |||||||| ||||| || Sbjct 38484 TCTGATACCATCGAAAACGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 38425 Query 155940 CAACAAAGATTGATTT 155955 || || ||||| ||| Sbjct 38424 CAGCAGCGATTGGTTT 38409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731632348513600