Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 100 4e-16
seq6 95.1 2e-14
seq8748 91.5 2e-13
seq1949 91.5 2e-13
seq545 86.0 9e-12
seq659 84.2 3e-11
>seq13211
Length=5644
Score = 100 bits (110), Expect = 4e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| |||||||| || | |||||||||| || |||||||| ||||| ||
Sbjct 4775 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4716
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
| || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||||||
Sbjct 4715 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4656
Query 18274 GAATATACCCTCAAC 18288
|||||||||||||||
Sbjct 4655 GAATATACCCTCAAC 4641
>seq6
Length=123133
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| |||||||| || | |||||||| | || |||||||| ||||| ||
Sbjct 115757 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 115816
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
| ||| ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| ||
Sbjct 115817 CAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 115876
Query 18274 GAATATACCCTCAAC 18288
|||||||||||||||
Sbjct 115877 GAATATACCCTCAAC 115891
>seq8748
Length=9037
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| |||||||| || | |||||||| | || |||||||| ||||| ||
Sbjct 8665 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 8606
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
| || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| ||
Sbjct 8605 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 8546
Query 18274 GAATATACCCTCAAC 18288
|||||||||||||||
Sbjct 8545 GAATATACCCTCAAC 8531
>seq1949
Length=26475
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| |||||||| || | |||||||| | || |||||||| ||||| ||
Sbjct 12043 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 11984
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
| || ||||| | ||| | ||| ||||||||||| || | || ||||| | ||| ||
Sbjct 11983 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 11924
Query 18274 GAATATACCCTCAAC 18288
|||||||||||||||
Sbjct 11923 GAATATACCCTCAAC 11909
>seq545
Length=42957
Score = 86.0 bits (94), Expect = 9e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|| ||| |||||||| || | |||||||||| || |||||||| ||||| ||
Sbjct 28599 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 28540
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
| || ||||| ||| | ||| ||||||||||| || | || ||||| | ||| ||
Sbjct 28539 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 28480
Query 18274 GAATATACCCTCAAC 18288
|||||||||||||||
Sbjct 28479 GAATATACCCTCAAC 28465
>seq659
Length=40447
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| || || | || || | ||||||||||| || || | |||||||| | |
Sbjct 38544 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 38485
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||||| || ||||||||| ||||| ||||| || |||||||| ||||| ||
Sbjct 38484 TCTGATACCATCGAAAACGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 38425
Query 155940 CAACAAAGATTGATTT 155955
|| || ||||| |||
Sbjct 38424 CAGCAGCGATTGGTTT 38409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731632348513600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |