Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq13211 109 1e-18 seq8748 104 5e-17 seq1949 104 5e-17 seq20991 102 2e-16 seq10756 102 2e-16 seq20290 98.7 2e-15 seq422 98.7 2e-15 seq545 96.9 7e-15 seq6 95.1 2e-14 >seq13211 Length=5644 Score = 109 bits (120), Expect = 1e-18 Identities = 177/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 4775 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4716 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | |||||| Sbjct 4715 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4656 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 4655 GAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 4598 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATA 50057 ||| | ||||| | ||||||||| |||||||| |||||| || | | |||| Sbjct 4597 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATATA 4538 Query 50058 GCTTTAAATAA 50068 || |||||||| Sbjct 4537 GCATTAAATAA 4527 >seq8748 Length=9037 Score = 104 bits (114), Expect = 5e-17 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 8665 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 8606 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| || Sbjct 8605 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 8546 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 8545 GAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 8488 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAA 50042 ||| | ||||| | ||||||||| |||||||| |||||| || Sbjct 8487 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 8443 >seq1949 Length=26475 Score = 104 bits (114), Expect = 5e-17 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 12043 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 11984 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| || Sbjct 11983 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 11924 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 11923 GAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTTTA 11866 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAA 50042 ||| | ||||| | ||||||||| |||||||| |||||| || Sbjct 11865 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 11821 >seq20991 Length=2947 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 2156 GTTCAATAATTCCACCACGAAGACGGAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 2215 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||||||||||||||||||||| Sbjct 2216 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCAGCAAAGAT 2264 >seq10756 Length=7202 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 4103 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 4162 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||||||||||||||||||||| Sbjct 4163 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCAGCAAAGAT 4211 >seq20290 Length=3127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 1306 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 1247 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| |||||||||||||| |||||||| Sbjct 1246 TATAATCAGCCAAAGTGCGTCCATCCTCCAATTGTTTACCGGCAAAGAT 1198 >seq422 Length=46818 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||| ||||| | |||||| | |||||||| | |||| ||| || ||||| Sbjct 45022 GTTCAATAATTCCACCACGAAGACGAAGAACTAAATGAAGTGTAGACTCCTTTTGGATAT 44963 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||||||||| || || ||| |||| ||||| ||||||||||||||||| Sbjct 44962 TATAATCAGCCAAAGTGCGTCCATCCTCCAACTGTTTACCAGCAAAGAT 44914 >seq545 Length=42957 Score = 96.9 bits (106), Expect = 7e-15 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 || ||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 28599 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 28540 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | ||| ||||| | || | || || |||||||| |||| |||||||| | ||| || Sbjct 28539 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 28480 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 28479 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 28422 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATA 50057 ||| | ||||| | ||||||||| |||||||| |||||| || | | |||| Sbjct 28421 CTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATATA 28362 Query 50058 GCTTTAAATAA 50068 || |||||||| Sbjct 28361 GCATTAAATAA 28351 >seq6 Length=123133 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | || || || | ||| || ||||||||||| || Sbjct 115757 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 115816 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 | || ||||| || || | || || |||||||| |||| |||||||| | ||| || Sbjct 115817 CAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 115876 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 |||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 115877 GAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTTTA 115934 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATAGAA 50042 ||| | ||||| | |||||| || |||||||| |||||| || Sbjct 115935 CTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAA 115979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984149572824600