Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13211 113 8e-20 seq8748 107 3e-18 seq1949 107 3e-18 seq545 100 5e-16 seq6 98.7 2e-15 seq261 84.2 4e-11 >seq13211 Length=5644 Score = 113 bits (124), Expect = 8e-20 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 4777 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 4718 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | |||| Sbjct 4717 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAA 4658 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 4657 AAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 4600 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357 ||| | ||||| | |||||||| |||||||| |||||| || | | || Sbjct 4599 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 4540 Query 39358 TAGCTTTAAATAA 39370 |||| |||||||| Sbjct 4539 TAGCATTAAATAA 4527 >seq8748 Length=9037 Score = 107 bits (118), Expect = 3e-18 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 8667 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 8608 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 8607 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 8548 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 8547 AAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 8490 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAA 39344 ||| | ||||| | |||||||| |||||||| |||||| || Sbjct 8489 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 8443 >seq1949 Length=26475 Score = 107 bits (118), Expect = 3e-18 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 12045 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 11986 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 11985 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 11926 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 11925 AAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTT 11868 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAA 39344 ||| | ||||| | |||||||| |||||||| |||||| || Sbjct 11867 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 11821 >seq545 Length=42957 Score = 100 bits (110), Expect = 5e-16 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||| ||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 28601 AGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 28542 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| | || | || || |||||||| |||| |||||||| | ||| Sbjct 28541 GTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 28482 Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298 |||||||||||||| || ||||| || || | | | | |||| || || || | Sbjct 28481 AAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 28424 Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357 ||| | ||||| | |||||||| |||||||| |||||| || | | || Sbjct 28423 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 28364 Query 39358 TAGCTTTAAATAA 39370 |||| |||||||| Sbjct 28363 TAGCATTAAATAA 28351 >seq6 Length=123133 Score = 98.7 bits (108), Expect = 2e-15 Identities = 212/308 (69%), Gaps = 13/308 (4%) Strand=Plus/Plus Query 39042 ttttctatttctacagcttgtttaattat--cataattatatt-attttttgataattta 39098 ||||| || || ||||| ||| |||||| | | | || || ||| |||| | ||| Sbjct 115680 TTTTCAATATCAACAGCCTGTCGAATTATTTCCTCAATACGTTCATTCTTTGGT---TTA 115736 Query 39099 tatttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTA 39158 | || | ||| | | | | |||||||| |||||||| ||| | ||||| || | | Sbjct 115737 TTATTCAAATGTT--GGAAA-AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGA 115793 Query 39159 GATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAAT 39218 || || ||||||||||| || | || ||||| || || | || || |||||||| Sbjct 115794 GAAATTAATTCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAA 115853 Query 39219 ATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTT 39278 |||| |||||||| | ||| |||||||||||||| || ||||| || || | | | Sbjct 115854 ATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGT 115913 Query 39279 GCTCCAAACATTAA-TTTATCATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttt 39336 | |||| || || || | ||| | ||||| | ||||| || |||||||| | Sbjct 115914 TCACCAA--ATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCT 115971 Query 39337 tGATAGAA 39344 ||||| || Sbjct 115972 TGATAAAA 115979 >seq261 Length=53585 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 |||||||| |||||||| ||| | ||||| || | ||| || ||||||||||| Sbjct 49153 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 49212 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || | ||| ||||| || || | || || |||||||| |||| |||||||| | ||| Sbjct 49213 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 49272 Query 39240 AAGAAT 39245 |||||| Sbjct 49273 AAGAAT 49278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904839613216800