Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq13211 113 8e-20
seq8748 107 3e-18
seq1949 107 3e-18
seq545 100 5e-16
seq6 98.7 2e-15
seq261 84.2 4e-11
>seq13211
Length=5644
Score = 113 bits (124), Expect = 8e-20
Identities = 179/253 (71%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 4777 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 4718
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | ||||
Sbjct 4717 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAA 4658
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 4657 AAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 4600
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357
||| | ||||| | |||||||| |||||||| |||||| || | | ||
Sbjct 4599 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 4540
Query 39358 TAGCTTTAAATAA 39370
|||| ||||||||
Sbjct 4539 TAGCATTAAATAA 4527
>seq8748
Length=9037
Score = 107 bits (118), Expect = 3e-18
Identities = 162/227 (71%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 8667 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 8608
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | |||
Sbjct 8607 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 8548
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 8547 AAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 8490
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAA 39344
||| | ||||| | |||||||| |||||||| |||||| ||
Sbjct 8489 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 8443
>seq1949
Length=26475
Score = 107 bits (118), Expect = 3e-18
Identities = 162/227 (71%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 12045 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 11986
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | |||
Sbjct 11985 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 11926
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 11925 AAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAA--ATGAAGCTTCTT 11868
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAA 39344
||| | ||||| | |||||||| |||||||| |||||| ||
Sbjct 11867 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 11821
>seq545
Length=42957
Score = 100 bits (110), Expect = 5e-16
Identities = 176/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||| ||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 28601 AGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGT 28542
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| | || | || || |||||||| |||| |||||||| | |||
Sbjct 28541 GTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 28482
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATC 39298
|||||||||||||| || ||||| || || | | | | |||| || || || |
Sbjct 28481 AAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAA--ATGAAGCTTCTT 28424
Query 39299 ATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 39357
||| | ||||| | |||||||| |||||||| |||||| || | | ||
Sbjct 28423 TACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAATA 28364
Query 39358 TAGCTTTAAATAA 39370
|||| ||||||||
Sbjct 28363 TAGCATTAAATAA 28351
>seq6
Length=123133
Score = 98.7 bits (108), Expect = 2e-15
Identities = 212/308 (69%), Gaps = 13/308 (4%)
Strand=Plus/Plus
Query 39042 ttttctatttctacagcttgtttaattat--cataattatatt-attttttgataattta 39098
||||| || || ||||| ||| |||||| | | | || || ||| |||| | |||
Sbjct 115680 TTTTCAATATCAACAGCCTGTCGAATTATTTCCTCAATACGTTCATTCTTTGGT---TTA 115736
Query 39099 tatttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTA 39158
| || | ||| | | | | |||||||| |||||||| ||| | ||||| || | |
Sbjct 115737 TTATTCAAATGTT--GGAAA-AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGA 115793
Query 39159 GATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAAT 39218
|| || ||||||||||| || | || ||||| || || | || || ||||||||
Sbjct 115794 GAAATTAATTCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAA 115853
Query 39219 ATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTT 39278
|||| |||||||| | ||| |||||||||||||| || ||||| || || | | |
Sbjct 115854 ATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGT 115913
Query 39279 GCTCCAAACATTAA-TTTATCATCTA-AAATCCAATTTATGGCCCAATCTGCtttttttt 39336
| |||| || || || | ||| | ||||| | ||||| || |||||||| |
Sbjct 115914 TCACCAA--ATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCT 115971
Query 39337 tGATAGAA 39344
||||| ||
Sbjct 115972 TGATAAAA 115979
>seq261
Length=53585
Score = 84.2 bits (92), Expect = 4e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|||||||| |||||||| ||| | ||||| || | ||| || |||||||||||
Sbjct 49153 AGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGT 49212
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| | ||| ||||| || || | || || |||||||| |||| |||||||| | |||
Sbjct 49213 GTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAG 49272
Query 39240 AAGAAT 39245
||||||
Sbjct 49273 AAGAAT 49278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904839613216800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |