Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2750 89.7 2e-12
seq504 86.0 2e-11
>seq2750
Length=22288
Score = 89.7 bits (98), Expect = 2e-12
Identities = 113/153 (74%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| |
Sbjct 19253 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 19312
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | ||||| || |||||| ||| | | | ||| | |||| | ||||||
Sbjct 19313 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 19369
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779
|||||| |||||| ||||| |||||||||||
Sbjct 19370 TGACATTTTGTGTAATGTTGGTTGACGATTGAA 19402
>seq504
Length=43960
Score = 86.0 bits (94), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686
||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| |
Sbjct 9339 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 9398
Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746
| | ||||| || |||||| ||| | | | ||| | |||| | ||||||
Sbjct 9399 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 9455
Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779
|||||| |||||| ||||| |||||||| ||
Sbjct 9456 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 9488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471323604660052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |