Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2750 89.7 2e-12 seq504 86.0 2e-11 >seq2750 Length=22288 Score = 89.7 bits (98), Expect = 2e-12 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| | Sbjct 19253 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 19312 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | ||||| || |||||| ||| | | | ||| | |||| | |||||| Sbjct 19313 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 19369 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779 |||||| |||||| ||||| ||||||||||| Sbjct 19370 TGACATTTTGTGTAATGTTGGTTGACGATTGAA 19402 >seq504 Length=43960 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | |||||||||||| ||||| || ||||||||||||||||| || |||| | Sbjct 9339 TTGCGGTAAATGTAAATTCATTTCATCTCCATCAAAATCAGCATTATAAGGTGTTGTAAC 9398 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | ||||| || |||||| ||| | | | ||| | |||| | |||||| Sbjct 9399 AGACAAATTCATACGAAAAGTA-GACCAAGGA--AGAACTTTAATTCTATGTCCCATCAT 9455 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779 |||||| |||||| ||||| |||||||| || Sbjct 9456 TGACATTTTGTGTAATGTTGGTTGACGATTAAA 9488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471323604660052