Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq7962 98.7 1e-15 seq263 98.7 1e-15 >seq7962 Length=9965 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 116728 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTGAAAGAAGAACTTAAACATTTTCA 116787 ||||||||||| ||||| || | || |||| ||| ||||| |||||||||| Sbjct 8030 TGGAATTGGAAAAAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 7971 Query 116788 AAATGTTACGACTTCTACTCAAGATAGTAGTaaaaaaaaTGCTGTTATTATGGGTCGAAA 116847 ||| | || || | ||| || || | ||||| ||||||||| | |||||| |||| Sbjct 7970 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 7911 Query 116848 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116901 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 7910 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 7857 >seq263 Length=53554 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 116728 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTGAAAGAAGAACTTAAACATTTTCA 116787 ||||||||||| ||||| || | || |||| ||| ||||| |||||||||| Sbjct 30165 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 30106 Query 116788 AAATGTTACGACTTCTACTCAAGATAGTAGTaaaaaaaaTGCTGTTATTATGGGTCGAAA 116847 ||| | || || | ||| || || | ||||| ||||||||| | |||||| |||| Sbjct 30105 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 30046 Query 116848 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116901 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 30045 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 29992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632282491280480