Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10671 109 4e-19 seq4503 109 4e-19 seq13147 93.3 3e-14 seq11515 93.3 3e-14 seq856 93.3 3e-14 seq20290 89.7 4e-13 seq5662 89.7 4e-13 seq3835 89.7 4e-13 seq659 89.7 4e-13 seq422 89.7 4e-13 seq18229 87.8 1e-12 seq16001 87.8 1e-12 seq12421 87.8 1e-12 seq91 87.8 1e-12 seq8172 86.0 5e-12 >seq10671 Length=7258 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | || Sbjct 4113 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 4055 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||||||||| || ||||| | ||||| ||||| ||||| Sbjct 4054 GTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTG 3995 Query 29784 CATT 29787 |||| Sbjct 3994 CATT 3991 Score = 95.1 bits (104), Expect = 9e-15 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | || Sbjct 3300 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATTGT 3242 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 3241 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 3182 Query 29784 CATTTT 29789 ||| || Sbjct 3181 CATATT 3176 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||| ||||| || ||| || | ||| ||| | || | ||| Sbjct 3577 TGCTGATCAGGTGGAATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTCTCAATAGT 3519 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||| ||||| ||||| || || || | || |||||||| || || Sbjct 3518 ATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTTG 3459 Query 29784 CATT 29787 |||| Sbjct 3458 CATT 3455 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || |||||||| |||||||||||||| |||||| | ||||| |||| | || Sbjct 3844 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTG-AATTTTAGCCTTGACGTTTTCAATCGT 3786 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || || || ||||| ||||| ||||| || || || ||||| || || || Sbjct 3785 ATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 3726 Query 29784 CATT 29787 |||| Sbjct 3725 CATT 3722 >seq4503 Length=16266 Score = 109 bits (120), Expect = 4e-19 Identities = 100/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 |||||||| |||||||| ||||| |||||||| |||||| | |||||| |||| | || Sbjct 8606 TGCTGATCTGGCGGAATCCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 8548 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||| ||||| || |||||||| || || ||||| || || Sbjct 8547 GTCAGATGCCTCAACTTCAAGAGTGATAGTCTTTCCAGTTAAAGTCTTGACAAAGATTTG 8488 Query 29784 CATT 29787 |||| Sbjct 8487 CATT 8484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | || Sbjct 7797 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATCGT 7739 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| ||| ||||||||||| || || || ||||| || || || || || ||||| Sbjct 7738 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 7679 Query 29784 CATTTTAAAA 29793 ||| || ||| Sbjct 7678 CATATTCAAA 7669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | || Sbjct 8336 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 8278 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || ||||| ||||| ||||| ||||| || || || ||||| || || || Sbjct 8277 ATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 8218 Query 29784 CATT 29787 |||| Sbjct 8217 CATT 8214 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||||||||||||||| || ||| || | ||| ||| | || | || Sbjct 8070 TGCTGATCAGGTGGAATACCCTCTTTGTCCTG-AATCTTAGCTTTCACATTCTCAATGGT 8012 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| ||||||||||| ||||| || || || | || || ||||| || || Sbjct 8011 ATCCGAGGCTTCCACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTCTTCACAAAAATTTG 7952 Query 29784 CATT 29787 |||| Sbjct 7951 CATT 7948 >seq13147 Length=5676 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 5223 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 5281 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 5282 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 5341 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 5342 AGATCTGCATATT 5354 >seq11515 Length=6677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 4808 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 4750 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 4749 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 4690 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 4689 AGATCTGCATATT 4677 >seq856 Length=36659 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 4865 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 4807 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 4806 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 4747 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 4746 AGATCTGCATATT 4734 >seq20290 Length=3127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 779 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 721 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 720 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 661 Query 29784 CAT 29786 ||| Sbjct 660 CAT 658 >seq5662 Length=13541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 7307 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 7249 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 7248 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 7189 Query 29784 CAT 29786 ||| Sbjct 7188 CAT 7186 >seq3835 Length=18222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 17935 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 17877 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 17876 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 17817 Query 29784 CAT 29786 ||| Sbjct 17816 CAT 17814 >seq659 Length=40447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || || ||| Sbjct 38413 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACGTTTT 38471 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | || |||||| || ||||||||||| || ||||| ||||| | || || || | Sbjct 38472 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 38531 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 38532 AGATCTGCATATT 38544 >seq422 Length=46818 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | || Sbjct 44374 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 44316 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || |||||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 44315 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 44256 Query 29784 CAT 29786 ||| Sbjct 44255 CAT 44253 >seq18229 Length=3682 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 1765 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 1707 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 1646 CATATTTAA 1638 >seq16001 Length=4432 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 2074 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 2016 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 1955 CATATTTAA 1947 >seq12421 Length=6087 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 1091 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 1033 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 972 CATATTTAA 964 >seq91 Length=67459 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | || Sbjct 15190 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 15132 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || ||||| |||||||| || || | || || ||||| ||||| Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072 Query 29784 CAT-TTTAA 29791 ||| ||||| Sbjct 15071 CATATTTAA 15063 >seq8172 Length=9710 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | || Sbjct 9431 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 9489 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || ||||| ||||| ||||| ||||| || || || ||||| || || || Sbjct 9490 ATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 9549 Query 29784 CATT 29787 |||| Sbjct 9550 CATT 9553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385096213473636