Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq10671 109 4e-19
seq4503 109 4e-19
seq13147 93.3 3e-14
seq11515 93.3 3e-14
seq856 93.3 3e-14
seq20290 89.7 4e-13
seq5662 89.7 4e-13
seq3835 89.7 4e-13
seq659 89.7 4e-13
seq422 89.7 4e-13
seq18229 87.8 1e-12
seq16001 87.8 1e-12
seq12421 87.8 1e-12
seq91 87.8 1e-12
seq8172 86.0 5e-12
>seq10671
Length=7258
Score = 109 bits (120), Expect = 4e-19
Identities = 100/124 (81%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|||||||| || ||||| ||||| |||||||| |||||| | |||||| |||| | ||
Sbjct 4113 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 4055
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || ||||||||||||||||| || ||||| | ||||| ||||| |||||
Sbjct 4054 GTCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTG 3995
Query 29784 CATT 29787
||||
Sbjct 3994 CATT 3991
Score = 95.1 bits (104), Expect = 9e-15
Identities = 98/126 (78%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | ||
Sbjct 3300 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATTGT 3242
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| ||| ||||||||||| || || || ||||| || || || || || |||||
Sbjct 3241 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 3182
Query 29784 CATTTT 29789
||| ||
Sbjct 3181 CATATT 3176
Score = 82.4 bits (90), Expect = 6e-11
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|||||||| || ||||||||||| ||||| || ||| || | ||| ||| | || | |||
Sbjct 3577 TGCTGATCAGGTGGAATACCCTCCTTGTCCTG-AATCTTAGCTTTCACATTCTCAATAGT 3519
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || ||| ||||| ||||| ||||| || || || | || |||||||| || ||
Sbjct 3518 ATCCGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTTG 3459
Query 29784 CATT 29787
||||
Sbjct 3458 CATT 3455
Score = 82.4 bits (90), Expect = 6e-11
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
||||| || |||||||| |||||||||||||| |||||| | ||||| |||| | ||
Sbjct 3844 TGCTGGTCTGGCGGAATCCCCTCTTTGTCTTG-AATTTTAGCCTTGACGTTTTCAATCGT 3786
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || || || || ||||| ||||| ||||| || || || ||||| || || ||
Sbjct 3785 ATCCGATGCCTCAACCTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 3726
Query 29784 CATT 29787
||||
Sbjct 3725 CATT 3722
>seq4503
Length=16266
Score = 109 bits (120), Expect = 4e-19
Identities = 100/124 (81%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|||||||| |||||||| ||||| |||||||| |||||| | |||||| |||| | ||
Sbjct 8606 TGCTGATCTGGCGGAATCCCCTCCTTGTCTTG-AATTTTGGCCTTGACATTTTCAATCGT 8548
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || ||||||||||| ||||| || |||||||| || || ||||| || ||
Sbjct 8547 GTCAGATGCCTCAACTTCAAGAGTGATAGTCTTTCCAGTTAAAGTCTTGACAAAGATTTG 8488
Query 29784 CATT 29787
||||
Sbjct 8487 CATT 8484
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
||||| |||||||| ||||| || |||||||| |||||| | || ||| |||| | ||
Sbjct 7797 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTG-AATTTTGGCCTTAACATTTTCAATCGT 7739
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| ||| ||||||||||| || || || ||||| || || || || || |||||
Sbjct 7738 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 7679
Query 29784 CATTTTAAAA 29793
||| || |||
Sbjct 7678 CATATTCAAA 7669
Score = 86.0 bits (94), Expect = 5e-12
Identities = 95/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | ||
Sbjct 8336 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 8278
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || || ||||| ||||| ||||| ||||| || || || ||||| || || ||
Sbjct 8277 ATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 8218
Query 29784 CATT 29787
||||
Sbjct 8217 CATT 8214
Score = 82.4 bits (90), Expect = 6e-11
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|||||||| || ||||||||||||||||| || ||| || | ||| ||| | || | ||
Sbjct 8070 TGCTGATCAGGTGGAATACCCTCTTTGTCCTG-AATCTTAGCTTTCACATTCTCAATGGT 8012
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || ||| ||||||||||| ||||| || || || | || || ||||| || ||
Sbjct 8011 ATCCGAGGCTTCCACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTCTTCACAAAAATTTG 7952
Query 29784 CATT 29787
||||
Sbjct 7951 CATT 7948
>seq13147
Length=5676
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716
||||| |||||||| || ||||| || || |||||||| |||||||| || ||| |||
Sbjct 5223 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 5281
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || |||||| || ||||||||||| || ||||| ||||| | || || || |
Sbjct 5282 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 5341
Query 29777 ATATCTGCATTTT 29789
| |||||||| ||
Sbjct 5342 AGATCTGCATATT 5354
>seq11515
Length=6677
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716
||||| |||||||| || ||||| || || |||||||| |||||||| || ||| |||
Sbjct 4808 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 4750
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || |||||| || ||||||||||| || ||||| ||||| | || || || |
Sbjct 4749 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 4690
Query 29777 ATATCTGCATTTT 29789
| |||||||| ||
Sbjct 4689 AGATCTGCATATT 4677
>seq856
Length=36659
Score = 93.3 bits (102), Expect = 3e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716
||||| |||||||| || ||||| || || |||||||| |||||||| || ||| |||
Sbjct 4865 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 4807
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || |||||| || ||||||||||| || ||||| ||||| | || || || |
Sbjct 4806 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 4747
Query 29777 ATATCTGCATTTT 29789
| |||||||| ||
Sbjct 4746 AGATCTGCATATT 4734
>seq20290
Length=3127
Score = 89.7 bits (98), Expect = 4e-13
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | ||
Sbjct 779 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 721
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || |||||||| || ||||| || || ||||| || || ||||| |||||
Sbjct 720 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 661
Query 29784 CAT 29786
|||
Sbjct 660 CAT 658
>seq5662
Length=13541
Score = 89.7 bits (98), Expect = 4e-13
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | ||
Sbjct 7307 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 7249
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || |||||||| || ||||| || || ||||| || || ||||| |||||
Sbjct 7248 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 7189
Query 29784 CAT 29786
|||
Sbjct 7188 CAT 7186
>seq3835
Length=18222
Score = 89.7 bits (98), Expect = 4e-13
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | ||
Sbjct 17935 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 17877
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || |||||||| || ||||| || || ||||| || || ||||| |||||
Sbjct 17876 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 17817
Query 29784 CAT 29786
|||
Sbjct 17816 CAT 17814
>seq659
Length=40447
Score = 89.7 bits (98), Expect = 4e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716
||||| |||||||| || ||||| || || |||||||| |||||||| || || |||
Sbjct 38413 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACGTTTT 38471
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || |||||| || ||||||||||| || ||||| ||||| | || || || |
Sbjct 38472 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 38531
Query 29777 ATATCTGCATTTT 29789
| |||||||| ||
Sbjct 38532 AGATCTGCATATT 38544
>seq422
Length=46818
Score = 89.7 bits (98), Expect = 4e-13
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| |||||||||||||| ||||| || ||||| ||| || | || ||| |||| | ||
Sbjct 44374 TGTTGATCCGGCGGAATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTTTCAATCGT 44316
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || |||||||| || ||||| || || ||||| || || ||||| |||||
Sbjct 44315 GTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATCTG 44256
Query 29784 CAT 29786
|||
Sbjct 44255 CAT 44253
>seq18229
Length=3682
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | ||
Sbjct 1765 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 1707
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || || || ||||| |||||||| || || | || || ||||| |||||
Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647
Query 29784 CAT-TTTAA 29791
||| |||||
Sbjct 1646 CATATTTAA 1638
>seq16001
Length=4432
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | ||
Sbjct 2074 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 2016
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || || || ||||| |||||||| || || | || || ||||| |||||
Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956
Query 29784 CAT-TTTAA 29791
||| |||||
Sbjct 1955 CATATTTAA 1947
>seq12421
Length=6087
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | ||
Sbjct 1091 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 1033
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || || || ||||| |||||||| || || | || || ||||| |||||
Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973
Query 29784 CAT-TTTAA 29791
||| |||||
Sbjct 972 CATATTTAA 964
>seq91
Length=67459
Score = 87.8 bits (96), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|| ||||| ||||| ||||||||||| ||||| |||||||| || ||| | || | ||
Sbjct 15190 TGTTGATCAGGCGGGATACCCTCTTTATCTTG-AATTTTTGCCTTAACATTCTCAATGGT 15132
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|||||| || || || ||||| |||||||| || || | || || ||||| |||||
Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072
Query 29784 CAT-TTTAA 29791
||| |||||
Sbjct 15071 CATATTTAA 15063
>seq8172
Length=9710
Score = 86.0 bits (94), Expect = 5e-12
Identities = 95/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
||||| || || ||||| |||||||||||||| |||||| | |||||| |||| | ||
Sbjct 9431 TGCTGGTCTGGTGGAATCCCCTCTTTGTCTTG-AATTTTGGCTTTGACGTTTTCAATCGT 9489
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || || ||||| ||||| ||||| ||||| || || || ||||| || || ||
Sbjct 9490 ATCCGATGCCTCAACTTCGAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATTTG 9549
Query 29784 CATT 29787
||||
Sbjct 9550 CATT 9553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385096213473636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |