Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_023611.1
Length=198533
Score E
Sequences producing significant alignments: (Bits) Value
seq7962 84.2 3e-11
seq2750 84.2 3e-11
seq504 84.2 3e-11
seq263 84.2 3e-11
>seq7962
Length=9965
Score = 84.2 bits (92), Expect = 3e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479
||||||||||| ||||| || | || |||| |||| ||||| ||||||||||
Sbjct 8030 TGGAATTGGAAAAAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 7971
Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539
|| | || || | || || || | ||||| || |||||| | |||||| | ||
Sbjct 7970 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 7911
Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593
| ||||| ||||||||| | |||| | |||||||| ||||| |||||||
Sbjct 7910 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 7857
>seq2750
Length=22288
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 51966 ATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 52025
||||||||| || | || | | | |||||||||||||||||||| |||||||||||||||
Sbjct 19324 ATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 19265
Query 52026 CATGTTCCTCAATC 52039
||| | || |||||
Sbjct 19264 CATTTACCGCAATC 19251
>seq504
Length=43960
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 51966 ATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 52025
||||||||| || | || | | | |||||||||||||||||||| |||||||||||||||
Sbjct 9410 ATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 9351
Query 52026 CATGTTCCTCAATC 52039
||| | || |||||
Sbjct 9350 CATTTACCGCAATC 9337
>seq263
Length=53554
Score = 84.2 bits (92), Expect = 3e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479
||||||||||| ||||| || | || |||| |||| ||||| ||||||||||
Sbjct 30165 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 30106
Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539
|| | || || | || || || | ||||| || |||||| | |||||| | ||
Sbjct 30105 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 30046
Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593
| ||||| ||||||||| | |||| | |||||||| ||||| |||||||
Sbjct 30045 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 29992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634969611094880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |