Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq7962 84.2 3e-11 seq2750 84.2 3e-11 seq504 84.2 3e-11 seq263 84.2 3e-11 >seq7962 Length=9965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479 ||||||||||| ||||| || | || |||| |||| ||||| |||||||||| Sbjct 8030 TGGAATTGGAAAAAATAATTCTTTGCCATGGAGATTACCTAAAGAATATAAACATTTTAT 7971 Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539 || | || || | || || || | ||||| || |||||| | |||||| | || Sbjct 7970 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 7911 Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 7910 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 7857 >seq2750 Length=22288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 51966 ATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 52025 ||||||||| || | || | | | |||||||||||||||||||| ||||||||||||||| Sbjct 19324 ATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 19265 Query 52026 CATGTTCCTCAATC 52039 ||| | || ||||| Sbjct 19264 CATTTACCGCAATC 19251 >seq504 Length=43960 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 51966 ATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 52025 ||||||||| || | || | | | |||||||||||||||||||| ||||||||||||||| Sbjct 9410 ATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 9351 Query 52026 CATGTTCCTCAATC 52039 ||| | || ||||| Sbjct 9350 CATTTACCGCAATC 9337 >seq263 Length=53554 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 116420 TGGAATTGGAAGTAATAACACTCTTCCTTGGAAATTAAAAGAAGAACTTAAACATTTTCA 116479 ||||||||||| ||||| || | || |||| |||| ||||| |||||||||| Sbjct 30165 TGGAATTGGAAAGAATAATTCTTTGCCGTGGAGATTACCTAAAGAATATAAACATTTTAT 30106 Query 116480 AGATGTTACGACTTCTACCCAAGATAGTAGTaaaaaaaaCGCTGTTATTATGGGTCGGAA 116539 || | || || | || || || | ||||| || |||||| | |||||| | || Sbjct 30105 TAATTTAACAACAACAACTAAAAATCCAAATAAAATTAATGCTGTTTTGATGGGTAGAAA 30046 Query 116540 AACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGAATAAATAT 116593 | ||||| ||||||||| | |||| | |||||||| ||||| ||||||| Sbjct 30045 ATGTTGGGAAAGTATTCCTGAAAAATATCGTCCATTAAAGAATCGTTTAAATAT 29992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634969611094880