Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7485 104 6e-17 seq2750 104 6e-17 seq1907 104 6e-17 seq504 98.7 2e-15 seq1305 84.2 5e-11 >seq7485 Length=10578 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 5041 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 4982 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 4981 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 4922 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| ||||| |||| ||||| Sbjct 4921 GGAGATGAAATGAATTTGCATTTACCGCAATC 4890 >seq2750 Length=22288 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 19402 TTCAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 19343 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 19342 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 19283 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| | ||| |||| ||||| Sbjct 19282 GGAGATGAAATGAATTTACATTTACCGCAATC 19251 >seq1907 Length=26802 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 18481 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 18422 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 18421 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 18362 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| ||||| |||| ||||| Sbjct 18361 GGAGATGAAATGAATTTGCATTTACCGCAATC 18330 >seq504 Length=43960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | |||||| || | || |||||||| ||||||| |||| | | ||||| | Sbjct 9488 TTTAATCGTCAACCAACATTACACAAAATGTCAATGATGGGACATAGAATTAAAGTTCTT 9429 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| | ||| | || | || ||||||||||| ||||||||| Sbjct 9428 CCTTGGTCTACTTTTCGTATGAATTTGTCTGTTACAACACCTTATAATGCTGATTTTGAT 9369 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||| | ||| |||| ||||| Sbjct 9368 GGAGATGAAATGAATTTACATTTACCGCAATC 9337 >seq1305 Length=31125 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 305403 TGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATG 305462 ||| |||| |||| |||| | |||||||||| || || || || ||||||||||| |||| Sbjct 15795 TGAAATTTAGATTTAATGAATGTGCTTGTACTCCATACAACGCTGATTTTGATGGCGATG 15736 Query 305463 AAATGAATATGCATGTACCTCAATCA 305488 |||||||| ||||| | || ||| || Sbjct 15735 AAATGAATGTGCATTTTCCACAAACA 15710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186414462602356