Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq22364 96.9 8e-15
seq16268 96.9 8e-15
seq9317 96.9 8e-15
seq8967 96.9 8e-15
seq5419 96.9 8e-15
seq1038 96.9 8e-15
seq783 96.9 8e-15
seq5107 91.5 3e-13
seq11515 86.0 1e-11
seq8819 86.0 1e-11
seq8172 86.0 1e-11
seq856 86.0 1e-11
seq659 86.0 1e-11
>seq22364
Length=2645
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 2019 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 2078
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 2079 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTA 2138
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || || || ||||| ||||| | || |||||||| |||||
Sbjct 2139 ATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAA 2188
>seq16268
Length=4329
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 3350 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 3291
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 3290 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 3231
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 3230 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 3181
>seq9317
Length=8507
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 771 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 830
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 831 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 890
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 891 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 940
>seq8967
Length=8834
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 6691 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 6632
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 6631 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 6572
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 6571 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 6522
>seq5419
Length=14078
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 13571 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 13630
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 13631 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 13690
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 13691 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 13740
>seq1038
Length=34009
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 17313 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 17372
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
||| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 17373 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 17432
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 17433 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 17482
>seq783
Length=38083
Score = 96.9 bits (106), Expect = 8e-15
Identities = 124/170 (73%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 20935 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 20994
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
|| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 20995 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 21054
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||||||||| ||||| | || ||||| || |||||
Sbjct 21055 ATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAA 21104
>seq5107
Length=14694
Score = 91.5 bits (100), Expect = 3e-13
Identities = 123/170 (72%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| ||
Sbjct 12623 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 12682
Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298
|| || ||| ||||| || || || || || || ||||| ||| | ||
Sbjct 12683 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 12742
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
|||||||| || ||||| ||||| ||||| | || ||||| || |||||
Sbjct 12743 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 12792
>seq11515
Length=6677
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 5724 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 5783
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 5784 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 5815
>seq8819
Length=8975
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 8628 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 8569
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 8568 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 8537
>seq8172
Length=9710
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | ||| || | |||||| |||||||| ||||||| ||||||||||| | |||
Sbjct 9016 CGAAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTATAGTCAGCGAGAGTG 9075
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843
| ||||| || |||||||| || ||||||||
Sbjct 9076 CGACCATCCTCAAGCTGCTTGCCAGCGAAGAT 9107
>seq856
Length=36659
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 5451 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 5510
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 5511 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 5542
>seq659
Length=40447
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358
|||||||| || || ||| | || |||||| | ||| | |||||||| ||| |||||||
Sbjct 37827 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 37768
Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||| |||||| | |||||
Sbjct 37767 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 37736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181424138098516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |