Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq22364 96.9 8e-15 seq16268 96.9 8e-15 seq9317 96.9 8e-15 seq8967 96.9 8e-15 seq5419 96.9 8e-15 seq1038 96.9 8e-15 seq783 96.9 8e-15 seq5107 91.5 3e-13 seq11515 86.0 1e-11 seq8819 86.0 1e-11 seq8172 86.0 1e-11 seq856 86.0 1e-11 seq659 86.0 1e-11 >seq22364 Length=2645 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 2019 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 2078 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 2079 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTA 2138 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || || || ||||| ||||| | || |||||||| ||||| Sbjct 2139 ATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAA 2188 >seq16268 Length=4329 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 3350 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 3291 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 3290 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 3231 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 3230 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 3181 >seq9317 Length=8507 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 771 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 830 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 831 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 890 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 891 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 940 >seq8967 Length=8834 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 6691 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 6632 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 6631 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 6572 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 6571 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 6522 >seq5419 Length=14078 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 13571 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 13630 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 13631 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 13690 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 13691 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 13740 >seq1038 Length=34009 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 17313 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 17372 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| || || || || || || ||||| ||| | || Sbjct 17373 GAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 17432 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 17433 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAA 17482 >seq783 Length=38083 Score = 96.9 bits (106), Expect = 8e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 20935 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 20994 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || ||||| ||| | || Sbjct 20995 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 21054 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||||||||| ||||| | || ||||| || ||||| Sbjct 21055 ATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAA 21104 >seq5107 Length=14694 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 12623 TTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCGGACACCATC 12682 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || ||||| ||| | || Sbjct 12683 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAGCAACGTCTC 12742 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 |||||||| || ||||| ||||| ||||| | || ||||| || ||||| Sbjct 12743 ATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAA 12792 >seq11515 Length=6677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 5724 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 5783 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 5784 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 5815 >seq8819 Length=8975 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 8628 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 8569 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 8568 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 8537 >seq8172 Length=9710 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | |||||| |||||||| ||||||| ||||||||||| | ||| Sbjct 9016 CGAAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTATAGTCAGCGAGAGTG 9075 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | ||||| || |||||||| || |||||||| Sbjct 9076 CGACCATCCTCAAGCTGCTTGCCAGCGAAGAT 9107 >seq856 Length=36659 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 5451 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 5510 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 5511 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 5542 >seq659 Length=40447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 37827 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 37768 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||| |||||| | ||||| Sbjct 37767 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 37736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181424138098516