Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq22908 78.8 3e-11 seq10670 78.8 3e-11 seq3311 78.8 3e-11 seq3155 78.8 3e-11 seq3108 78.8 3e-11 seq2616 78.8 3e-11 seq2218 78.8 3e-11 seq1353 78.8 3e-11 seq1249 78.8 3e-11 seq996 78.8 3e-11 seq64 78.8 3e-11 >seq22908 Length=2541 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 986 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 1043 >seq10670 Length=7261 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 5717 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 5660 >seq3311 Length=19964 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 10037 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 9980 >seq3155 Length=20556 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 17187 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 17130 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 17381 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 17324 >seq3108 Length=20761 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 17038 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 16981 >seq2616 Length=22834 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 8594 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 8537 >seq2218 Length=24882 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 3932 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 3989 >seq1353 Length=30712 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 25151 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 25208 >seq1249 Length=31660 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 1709 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 1766 >seq996 Length=34600 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 12697 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 12754 >seq64 Length=71709 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||| |||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 50442 TAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 50385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15845058792420