Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq554 138 2e-27 seq865 134 2e-26 seq668 129 8e-25 seq13211 125 1e-23 seq1949 125 1e-23 seq8748 122 1e-22 seq21 116 5e-21 seq6 107 3e-18 seq545 96.9 5e-15 seq261 89.7 7e-13 >seq554 Length=42686 Score = 138 bits (152), Expect = 2e-27 Identities = 205/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 69745 TTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||||||||||||||||| || || | || || | |||| | ||| || ||| ||||| Sbjct 15020 TTATTTCCTCCCTGATCAATATAGCGTGCCACAG-AATTAAAAACTTGCAACATTGGAAT 15078 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||| ||||| || || |||||||||||||| || || ||| || ||||| | Sbjct 15079 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 15138 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 ||| || || || |||||||| ||| ||| ||||| ||||||||| || | ||| || Sbjct 15139 AATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTC 15198 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 15199 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 15258 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 15259 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 15306 Score = 102 bits (112), Expect = 1e-16 Identities = 189/275 (69%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||| | ||| ||||| || || || ||||| ||| | |||||||||| Sbjct 10043 TGTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGA 10102 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || | ||| | ||| ||||||| || ||||| | ||| | ||||||||||| ||||| Sbjct 10103 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 10162 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGT 68582 |||| ||| ||| | |||||||| || || ||| ||||||||||||| ||| Sbjct 10163 AAAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGT 10222 Query 68583 CT--TAAAAATCTGTTTGATATCATCTGGAAGGC---TCGTATTTTGAATGGATCCACCA 68637 | || ||| | ||||||||| ||||| | | ||||||| | || || ||| Sbjct 10223 TTTGTATAAAGC--TTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCA 10280 Query 68638 TCGGATATAATTATATTCTTGATCTCATCATTCCA 68672 || ||||| | |||||| || | |||| ||| Sbjct 10281 TCAGATATTAAACGATTCTTCATTTGGTCATCCCA 10315 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||| ||| |||| ||||| ||||||||| |||||||| |||||||||||| ||||| Sbjct 13659 ATAAAGCTGTTCAAATTCCTCTCCCCAACACTCATCCAAGTTAGGACATTCATTCGGACA 13718 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| || ||||| | |||||||| | ||||| |||||||| Sbjct 13719 CATTAAAGACCAAATGTCATCATCTCTCACTCGCTTCATAAA 13760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 15709 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 15768 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || || ||| || Sbjct 15769 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 15827 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || |||||||| || ||||| ||||| Sbjct 15828 ACGATCATAAATAATTACTGAATTGAGTTT 15857 >seq865 Length=36480 Score = 134 bits (148), Expect = 2e-26 Identities = 204/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 69745 TTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||||||||||||||||| || || | || || | |||| | ||| || ||| ||||| Sbjct 34578 TTATTTCCTCCCTGATCAATATAGCGTGCCACCG-AATTAAAAACTTGCAACATTGGAAT 34636 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||| ||||| || || |||||||||||||| || || ||| || ||||| | Sbjct 34637 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 34696 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 ||| || || || |||||||| ||| ||| || || ||||||||| || | ||| || Sbjct 34697 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTC 34756 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 34757 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 34816 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 34817 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 34864 Score = 114 bits (126), Expect = 2e-20 Identities = 192/275 (70%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||| | ||| ||||| || ||||||||||| ||| | |||||||||| Sbjct 30176 TGTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGA 30235 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || | ||| | ||| ||||||| || ||||| | ||| | ||||||||||| ||||| Sbjct 30236 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 30295 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGT 68582 |||| ||| ||| | |||||||| ||||| ||| ||||||||||||| ||| Sbjct 30296 AAAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGT 30355 Query 68583 CT--TAAAAATCTGTTTGATATCATCTGGAAGGC---TCGTATTTTGAATGGATCCACCA 68637 | || ||| | ||||||||| ||||| | | ||||||| | || || ||| Sbjct 30356 TTTGTATAAAGC--TTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCA 30413 Query 68638 TCGGATATAATTATATTCTTGATCTCATCATTCCA 68672 || ||||| | |||||| || | |||| ||| Sbjct 30414 TCAGATATTAAACGATTCTTCATTTGGTCATCCCA 30448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 35270 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 35329 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || || ||| || Sbjct 35330 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 35388 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || |||||||| || ||||| ||||| Sbjct 35389 ACGATCATAAATAATTACTGAATTGAGTTT 35418 >seq668 Length=40291 Score = 129 bits (142), Expect = 8e-25 Identities = 203/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 69745 TTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||||| ||||||||||| || || | || || | |||| | ||| || ||| ||||| Sbjct 28603 TTATTCCCTCCCTGATCAATATAGCGTGCCACCG-AATTAAAAACTTGCAACATTGGAAT 28661 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||| ||||| || || |||||||||||||| || || ||| || ||||| | Sbjct 28662 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 28721 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || || || || |||||||| ||| ||| ||||| ||||||||| || | ||| || Sbjct 28722 GATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTC 28781 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 28782 AAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 28841 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 28842 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 28889 Score = 111 bits (122), Expect = 2e-19 Identities = 191/275 (69%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||| | ||| ||||| || || |||||||| ||| | |||||||||| Sbjct 24054 TGTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGA 24113 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || | ||| | ||| ||||||| || ||||| | ||| | ||||||||||| ||||| Sbjct 24114 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 24173 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGT 68582 |||| ||| |||| | |||||||| || || ||| ||||||||||||| ||| Sbjct 24174 AAAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGT 24233 Query 68583 CT--TAAAAATCTGTTTGATATCATCTGGAAGGC---TCGTATTTTGAATGGATCCACCA 68637 | || ||| | ||||||||| ||||| | | ||||||| | || || ||| Sbjct 24234 TTTGTATAAAGC--TTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCA 24291 Query 68638 TCGGATATAATTATATTCTTGATCTCATCATTCCA 68672 || ||||| | |||||| || | |||| ||| Sbjct 24292 TCAGATATTAAACGATTCTTCATTTGGTCATCCCA 24326 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || |||||||||||||||||||| || | || || ||| ||| Sbjct 29103 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 29162 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGTC 70202 ||| ||| ||||| ||| ||| || |||||||| |||||||| | || |||||| || Sbjct 29163 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 29221 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || ||||||||||| ||||| ||||| Sbjct 29222 ACGATCATAAATAATAACTGAATTGAGTTT 29251 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||| ||| |||| ||||| ||||||||| |||||||| ||||||||||| ||||| Sbjct 27288 ATAAAGCTGTTCAAATTCCTCTCCCCAACACTCATCCAAGTTGGGACATTCATTCGGACA 27347 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| || ||||| | |||||||| | || || |||||||| Sbjct 27348 CATTAAAGACCAAATGTCATCATCTCTCACACGCTTCATAAA 27389 >seq13211 Length=5644 Score = 125 bits (138), Expect = 1e-23 Identities = 289/440 (66%), Gaps = 49/440 (11%) Strand=Plus/Minus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||||| || | ||| || || || || | ||| || || ||||||| | ||||||| Sbjct 4789 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4730 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| | ||| || || || |||||||| || |||||| Sbjct 4729 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4670 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---- 39774 ||| |||||||||||| || || || ||||||||||| |||| || | || || Sbjct 4669 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAAT 4610 Query 39775 GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | ||| | | | || |||| | |||||||||||||| ||||| | | || Sbjct 4609 GAAGCTTCT-TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 4551 Query 39835 CATTGTTTCTATAGCATTAAAGA-----GA---------------TAATGTTTTTCATC- 39873 | | |||||||||||| | || | || ||||| ||| Sbjct 4550 AAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCT 4491 Query 39874 ------------AC----------TATCTTTAACATATGTATCTATTAACAGACTATACA 39911 || |||||||| ||| ||||| ||||| ||||| Sbjct 4490 AAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACA 4431 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||||||||| || |||||||| || || |||||||| |||||||| | || || | | Sbjct 4430 TTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTA 4371 Query 39972 TTTGTACCTC-TGAACAAAA 39990 |||| || || ||| ||||| Sbjct 4370 TTTGAACTTCTTGAGCAAAA 4351 >seq1949 Length=26475 Score = 125 bits (138), Expect = 1e-23 Identities = 286/435 (66%), Gaps = 44/435 (10%) Strand=Plus/Minus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||||| || | ||| || || || || | ||| || || ||||| | | ||||||| Sbjct 12057 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 11998 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| | ||| || || || |||||||| || |||||| Sbjct 11997 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 11938 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---- 39774 ||| |||||| ||||| || || || ||||| ||||| |||| ||| | || || Sbjct 11937 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAAT 11878 Query 39775 GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | ||| | | | || |||| | |||||||||||||| ||||| | | || Sbjct 11877 GAAGCTTCT-TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 11819 Query 39835 CATTGTTTCTATAGCATTAAA---------------GAGATAATGTTTTTCATC------ 39873 | |||||||||||| | | ||| ||||| ||| Sbjct 11818 AAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAAGA 11759 Query 39874 -------AC----------TATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || |||||||| ||| ||||| ||||| |||||||||| Sbjct 11758 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 11699 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 ||||| || |||||||| || || |||||||| |||||||| | ||||| | ||||| Sbjct 11698 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGA 11639 Query 39977 ACCTC-TGAACAAAA 39990 || || ||| ||||| Sbjct 11638 ACTTCTTGAGCAAAA 11624 >seq8748 Length=9037 Score = 122 bits (134), Expect = 1e-22 Identities = 287/435 (66%), Gaps = 44/435 (10%) Strand=Plus/Minus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||||| || | ||| || || || || | ||| || || ||||| | | ||||||| Sbjct 8679 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 8620 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| | ||| || || || |||||||| || |||||| Sbjct 8619 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 8560 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---- 39774 ||| |||||| ||||| || || || ||||| ||||| |||| || | || || Sbjct 8559 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAAT 8500 Query 39775 GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | ||| | | | || |||| | |||||||||||||| ||||| | | || Sbjct 8499 GAAGCTTCT-TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 8441 Query 39835 CATTGTTTCTATAGCATTAAAGA-----GA-----TAA-----TGTTTTTCATC------ 39873 | |||||||||||| | || ||| | ||||| ||| Sbjct 8440 AAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTTTAATCTGAAGA 8381 Query 39874 -------AC----------TATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || |||||||| ||| ||||| ||||| |||||||||| Sbjct 8380 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 8321 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 ||||| || |||||||| || || |||||||| |||||||| | ||||| | ||||| Sbjct 8320 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGA 8261 Query 39977 ACCTC-TGAACAAAA 39990 || || ||| ||||| Sbjct 8260 ACTTCTTGAGCAAAA 8246 >seq21 Length=96658 Score = 116 bits (128), Expect = 5e-21 Identities = 200/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 69745 TTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||||| ||||||||||| || || | || || | |||| | ||| | ||| ||||| Sbjct 28139 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGA-ATTAAAAACTTGTAACATTGGAAT 28081 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||| ||||| || || |||||||||||||| || || ||| || ||||| | Sbjct 28080 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 28021 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 ||| || || || |||||||| ||| ||| ||||| |||||| || || | ||| || Sbjct 28020 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAGCGATTAATTGTTTC 27961 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 | | || || || || ||| | | ||| ||| | |||||| || | || | Sbjct 27960 AAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAGGAAAGCTGTGG 27901 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 | || | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 27900 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 27853 Score = 105 bits (116), Expect = 9e-18 Identities = 190/275 (69%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||| | ||| ||||| || ||||| ||||| ||| | |||||||||| Sbjct 32395 TGTACGCAAATAATACATTCCTGTTTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGA 32336 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || | ||| | ||| ||||||| || ||||| | ||| | ||||||||||| ||||| Sbjct 32335 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 32276 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGT 68582 |||| ||| ||| | |||||||| || || ||| ||||||||||||| ||| Sbjct 32275 AAAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGT 32216 Query 68583 CT--TAAAAATCTGTTTGATATCATCTGGAAGGC---TCGTATTTTGAATGGATCCACCA 68637 | || ||| | ||||||||| ||||| | | ||||||| | || || ||| Sbjct 32215 TTTGTATAAAGC--TTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCA 32158 Query 68638 TCGGATATAATTATATTCTTGATCTCATCATTCCA 68672 || ||||| | |||||| || | |||| ||| Sbjct 32157 TCAGATATTAAACGATTCTTCATTTGGTCATCCCA 32123 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 69104 CCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAG 69163 |||| || ||||| || || || | ||||| |||||||| |||||||| ||||| || Sbjct 30637 CCTGTACACCAATTCCAATTGGACGATGTCGAAGATTTGAACGTTCAGCTTGTGGAACAG 30578 Query 69164 GATAATAATTAATATCTATAATTTTATTAAGATTTC 69199 |||||||||| ||||| || ||||| || | ||||| Sbjct 30577 GATAATAATTTATATCAATTATTTTGTTCAAATTTC 30542 >seq6 Length=123133 Score = 107 bits (118), Expect = 3e-18 Identities = 276/424 (65%), Gaps = 41/424 (10%) Strand=Plus/Plus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||||| || | ||| || || || || | ||| || || ||||| | | ||||||| Sbjct 115743 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 115802 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| || |||||||| | ||| || || || |||||||| || |||||| Sbjct 115803 TCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 115862 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---- 39774 ||| |||||| ||||| || || || |||| ||||| |||| || | || || Sbjct 115863 AAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCAAAT 115922 Query 39775 GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | ||| | | | || |||| | ||||| |||||||| ||||| | | || Sbjct 115923 GAAGCTTCTTT-ACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAATC 115981 Query 39835 CATTGTTTCTATAGCATTAAAGAGAT--------------AATGTTTT----TCA----- 39871 | | |||||||||||| | | ||| |||| | | Sbjct 115982 AAATTCAAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTAATCTAAAAAAG 116041 Query 39872 ----------TCACT---ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 ||| | |||||||| ||| ||||| ||||| |||||||||||| Sbjct 116042 GAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGA 116101 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 ||| || |||||||| || || |||||||| |||||||| | ||||| | ||||| || Sbjct 116102 ATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAAC 116161 Query 39979 CTCT 39982 ||| Sbjct 116162 TTCT 116165 >seq545 Length=42957 Score = 96.9 bits (106), Expect = 5e-15 Identities = 282/441 (64%), Gaps = 50/441 (11%) Strand=Plus/Minus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||| | || | || || || || || | ||| || || ||||||| | ||||||| Sbjct 28613 AAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 28554 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| ||| || || || |||||||| || |||||| Sbjct 28553 TCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 28494 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC---- 39774 ||| |||||| ||||| || || || || || ||||| |||| || | || || Sbjct 28493 AAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAAT 28434 Query 39775 GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | ||| | | | || |||| | |||||||||||||| ||||| | | || Sbjct 28433 GAAGCTTCT-TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 28375 Query 39835 CATTGTTTCTATAGCATT--------------------AAAGAGATAATGTTTTTCA--- 39871 | | ||||||||| ||| | ||| | ||||| | Sbjct 28374 AAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATT 28315 Query 39872 ------------------TCACT---ATCTTTAACATATGTATCTATTAACAGACTATAC 39910 ||| | |||||||| ||| ||||| ||||| |||| Sbjct 28314 TAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATAC 28255 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 ||||||||||| || |||||||| || || |||||||| |||||||| | || || | Sbjct 28254 ATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGT 28195 Query 39971 ATTTGTACCTC-TGAACAAAA 39990 ||||| || || ||| ||||| Sbjct 28194 ATTTGAACTTCTTGAGCAAAA 28174 >seq261 Length=53585 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 ||||||| || | ||| || || || || | ||| || || ||||| | | ||||||| Sbjct 49141 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 49200 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || ||| ||| ||||||||||| | ||| || || || |||||||| || |||||| Sbjct 49201 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 49260 Query 39719 AAAGATCCAGAAAAGAA 39735 ||| |||||| ||||| Sbjct 49261 AAACTTCCAGAGAAGAA 49277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686683871713440