Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 131 1e-25 seq8748 114 1e-20 seq1949 114 1e-20 seq13211 111 1e-19 seq545 111 1e-19 seq261 86.0 5e-12 seq16566 84.2 2e-11 >seq6 Length=123133 Score = 131 bits (144), Expect = 1e-25 Identities = 280/421 (67%), Gaps = 43/421 (10%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || |||||||||||||||||| |||||||||| || ||||||||||| ||||||||||| Sbjct 116176 CGTTTTGCGCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCT 116117 Query 43964 ATAGAAAATATTCATTCGGAAATGTA--CAGTCTTCTGATAGATACGTACATCAAAGAT- 44020 || |||||||||||||| |||||||| || | | || ||||| || || |||||| Sbjct 116116 ATTGAAAATATTCATTCAGAAATGTATTCAAAAT--TAATTGATACTTATATTAAAGATC 116059 Query 44021 ---GGGCACG--------------AGAAGCA----------------TCGA--TTGTTTA 44045 | ||| ||| | || | ||||||| Sbjct 116058 CGATTGAACGGTATTTCCTTTTTTAGATTAAAAAATTTTTTAATAGTTCAAAGTTGTTTA 115999 Query 44046 ATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA--- 44102 |||| ||| | | | || || | ||||| || ||||| ||| |||| Sbjct 115998 ATGCTATATTTGAATTTGATTTTATCAAGAAAAAAGCTGAATGGGCTCTTCGTTGGACTG 115939 Query 44103 TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTT 44162 | | | | | ||| ||||| ||||| || | || ||||| || || || || | Sbjct 115938 CTAGTAAAGAAGCTTCATTTGGTGAACGTCTCATTGCTTTTGCCACAGTTGAGGGTATAT 115879 Query 44163 TCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGT 44222 |||| || ||| ||||| || || |||||| |||||||||| ||||| ||||||||| Sbjct 115878 TCTTCTCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGGC 115819 Query 44223 TGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCT 44282 |||| ||||| ||||| |||||||||||| | ||| | ||||||||||| | Sbjct 115818 TGACACAAAGTAATGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTT 115759 Query 44283 T 44283 | Sbjct 115758 T 115758 >seq8748 Length=9037 Score = 114 bits (126), Expect = 1e-20 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| |||||||||| || ||||||||||| ||||||||||| Sbjct 8244 CGTTTTGCTCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCT 8303 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 8304 ATTGAAAATATTCATTCAGAAATGTA 8329 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||| | || || || || ||||| || ||| Sbjct 8497 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAG 8556 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| ||||| |||||||| |||| || Sbjct 8557 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 8616 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| |||||||||||| | ||| | ||||||||||| || Sbjct 8617 TGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTT 8664 >seq1949 Length=26475 Score = 114 bits (126), Expect = 1e-20 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| |||||||||| || ||||||||||| ||||||||||| Sbjct 11622 CGTTTTGCTCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCT 11681 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 11682 ATTGAAAATATTCATTCAGAAATGTA 11707 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| ||| | || ||||| | || || || || ||||| || ||| Sbjct 11875 TTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAG 11934 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| ||||| |||||||| |||| || Sbjct 11935 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 11994 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| |||||||||||| | ||| | ||||||||||| || Sbjct 11995 TGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTT 12042 >seq13211 Length=5644 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||| Sbjct 4349 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 4408 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 4409 ATTGAAAATATTCATTCAGAAATGTA 4434 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||||| || || || || |||||||| ||| Sbjct 4607 TTCATTTGGTGAACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAG 4666 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| ||||| |||||||| |||| || Sbjct 4667 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAA 4726 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| ||| |||||||| | ||| | ||||||||||| || Sbjct 4727 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTTT 4774 >seq545 Length=42957 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||| Sbjct 28172 CGTTTTGCTCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCT 28231 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||||||||| |||||||| Sbjct 28232 ATTGAAAATATTCATTCAGAAATGTA 28257 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||| ||||| || | || ||||| | || || || || ||||| || ||| Sbjct 28431 TTCATTTGGTGAACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAG 28490 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||| |||||||||| |||| |||||||| |||| || Sbjct 28491 TTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAA 28550 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||| ||||| ||| |||||||| | ||| | ||||||||||| Sbjct 28551 TGAATTAATTTCTCGAGATGAAGGACTTCATCGAGATTTTGCTTG 28595 >seq261 Length=53585 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44162 TTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 ||||| || ||| ||||| || || |||||| |||||||||| ||||| |||||||| Sbjct 49277 TTCTTCTCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGA 49218 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||| ||||| ||||| |||||||||||| | ||| | ||||||||||| Sbjct 49217 CTGACACAAAGTAATGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 49158 Query 44282 TT 44283 || Sbjct 49157 TT 49156 >seq16566 Length=4225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||||||||| ||||| || ||||| || || ||||||| || |||||| | ||| | Sbjct 2147 GGAGTACATGATACTGTGGTTAATCAGCTTCTCACAAAATTGGATGGTGTTGAACAATTA 2088 Query 19672 AATAATATTTTAGTTATTGGCATGACTAA 19700 || |||||| | |||||||| |||||||| Sbjct 2087 AACAATATTCTCGTTATTGGAATGACTAA 2059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 19210 TTATTA--CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTT 19267 |||||| ||| ||||| || | || | ||| ||||||||||||| |||||| |||| Sbjct 2654 TTATTAATCCAGATTGGGATTTCCAACAGATGGGAATTGGAGGATTGGATAAAGAATTTT 2595 Query 19268 CTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAAT 19327 |||| || ||| | | || |||| |||||||| ||| || | || | ||| |||||| Sbjct 2594 CTGATATTTTTAGACGTGCGTTTGCATCGCGTGTCTTTCCTCCGGAATTTATTGAACAAT 2535 Query 19328 TGGG 19331 |||| Sbjct 2534 TGGG 2531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397329106706980