Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq13147 87.8 2e-12 seq856 87.8 2e-12 seq11515 82.4 6e-11 seq668 82.4 6e-11 seq554 82.4 6e-11 >seq13147 Length=5676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 4953 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5012 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| ||||||||| ||| Sbjct 5013 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5072 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 5073 ATTTGCAT 5080 >seq856 Length=36659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 5677 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5618 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| ||||||||| ||| Sbjct 5617 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5558 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 5557 ATTTGCAT 5550 >seq11515 Length=6677 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 || ||||| ||||| || || | || || ||||| |||||| || | | |||| Sbjct 5950 AGGCGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5891 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | |||||| | ||||||||||| || || |||| || || |||| ||||||||| ||| Sbjct 5890 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5831 Query 27240 ATTTGCAT 27247 |||||||| Sbjct 5830 ATTTGCAT 5823 >seq668 Length=40291 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103 ||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| ||||| Sbjct 25588 AGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCTTG 25647 Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 | ||| | ||||||| ||| ||||||||||| || || | ||||| Sbjct 25648 ATCGCTGACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 25697 >seq554 Length=42686 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131044 AGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG 131103 ||||||||| || || ||||| || ||||| ||||||||| ||||| | ||| || || Sbjct 11465 AGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTTAACTCTTTGGCCTG 11524 Query 131104 GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 || ||| | ||||||| ||| ||||||||||| || || | ||||| Sbjct 11525 GTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAACCCT 11574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424798733849952