Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_028104.1
Length=73689
Score E
Sequences producing significant alignments: (Bits) Value
seq5290 86.0 3e-12
seq5043 82.4 4e-11
seq304 82.4 4e-11
>seq5290
Length=14310
Score = 86.0 bits (94), Expect = 3e-12
Identities = 119/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 13049 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 13108
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
|||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 13109 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 13165
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
|||| ||| |||| ||||| |||||||| | |||
Sbjct 13166 CATTTCACCAACAGCTCCAGCCAATTGTGCAACTTTGACTTC 13207
>seq5043
Length=14830
Score = 82.4 bits (90), Expect = 4e-11
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 3528 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 3469
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
|||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 3468 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 3412
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
|||| ||| ||| ||||| |||||||| | |||
Sbjct 3411 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 3370
>seq304
Length=51562
Score = 82.4 bits (90), Expect = 4e-11
Identities = 118/162 (73%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145
||| || ||||| |||||| |||||||||||| ||| || || || || |||| | ||||
Sbjct 27379 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 27438
Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202
||||||| |||| | ||||| || |||| | | | ||| || ||||||||| ||||
Sbjct 27439 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 27495
Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244
||| ||| ||| ||||| |||||||| | |||
Sbjct 27496 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 27537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 235604755919400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |