Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq5290 86.0 3e-12 seq5043 82.4 4e-11 seq304 82.4 4e-11 >seq5290 Length=14310 Score = 86.0 bits (94), Expect = 3e-12 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 13049 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 13108 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 |||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 13109 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 13165 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 |||| ||| |||| ||||| |||||||| | ||| Sbjct 13166 CATTTCACCAACAGCTCCAGCCAATTGTGCAACTTTGACTTC 13207 >seq5043 Length=14830 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 3528 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 3469 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 |||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 3468 TTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 3412 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 |||| ||| ||| ||||| |||||||| | ||| Sbjct 3411 CATTTCACCAACAGCACCAGCCAATTGTGCAACTTTGACTTC 3370 >seq304 Length=51562 Score = 82.4 bits (90), Expect = 4e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 ||| || ||||| |||||| |||||||||||| ||| || || || || |||| | |||| Sbjct 27379 TCGAGTACCAAATTGACCAATTGGCATTAATAGATTGATGTTATTAGAGCCAACATAATT 27438 Query 65146 CTGAGCC--ATTCCGATAATTGCTG-CATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 ||||||| |||| | ||||| || |||| | | | ||| || ||||||||| |||| Sbjct 27439 CTGAGCCAAATTC--ACAATTGTTGACATTAATGATTG-TTCTCCATGATGATATGCTGA 27495 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 ||| ||| ||| ||||| |||||||| | ||| Sbjct 27496 CATCTCACCAACAGCACCAGCCAATTGCGCAACTTTGACTTC 27537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235604755919400