Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq2703 109 4e-19 seq1923 109 4e-19 seq11554 104 2e-17 seq7082 104 2e-17 >seq2703 Length=22513 Score = 109 bits (120), Expect = 4e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||||||||| |||| ||||||||| Sbjct 10892 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGTGCATCACCAAGTGTATGAAT 10833 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 10832 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 10773 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 10772 GGCTATATTGAAAGGAACGCCTAAA 10748 >seq1923 Length=26693 Score = 109 bits (120), Expect = 4e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||||||||| |||| ||||||||| Sbjct 18438 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGTGCATCACCAAGTGTATGAAT 18497 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 18498 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 18557 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 18558 GGCTATATTGAAAGGAACGCCTAAA 18582 >seq11554 Length=6653 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||| ||||| |||| ||||||||| Sbjct 1421 TTGTGTTTTTAAAGCTTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 1480 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 1481 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 1540 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 1541 GGCTATATTGAAAGGAACGCCTAAA 1565 >seq7082 Length=11116 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 126059 TTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAAT 126118 |||||| | || || || | ||| | ||||||||||| ||||| |||| ||||||||| Sbjct 6465 TTGTGTTTTTAAAGCCTCTAAATGTGTAGAATAAATATGAGCATCACCAAGTGTATGAAT 6406 Query 126119 GAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACT 126178 ||||||||| | | |||||| | | | || | | ||| || ||||| | |||||| Sbjct 6405 AAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAACT 6346 Query 126179 TGCAATATTGAAAGGAACACCTAAA 126203 || |||||||||||||| |||||| Sbjct 6345 GGCTATATTGAAAGGAACGCCTAAA 6321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408467949342572