Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq18229 98.7 7e-16 seq16001 98.7 7e-16 seq12421 98.7 7e-16 seq91 98.7 7e-16 >seq18229 Length=3682 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 1638 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 1697 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| | ||||||| || ||||| ||| | ||||| Sbjct 1698 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 1756 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 1757 TGATCAACAGCGTTT 1771 >seq16001 Length=4432 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 1947 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 2006 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| | ||||||| || ||||| ||| | ||||| Sbjct 2007 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 2065 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 2066 TGATCAACAGCGTTT 2080 >seq12421 Length=6087 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 964 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 1023 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| | ||||||| || ||||| ||| | ||||| Sbjct 1024 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 1082 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 1083 TGATCAACAGCGTTT 1097 >seq91 Length=67459 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||||||||| || || || ||||| |||||||| || |||||||| ||||| Sbjct 15063 TTAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAG 15122 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || |||| ||| |||| | ||||||| || ||||| ||| | ||||| Sbjct 15123 GCTTCTGATACCATTGAGAATGTTAAGGC-AAAAATTCAAGATAAAGAGGGTATCCCGCC 15181 Query 23724 AGATCAACAGCGTTT 23738 |||||||||||||| Sbjct 15182 TGATCAACAGCGTTT 15196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337901685787568