Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq22364 122 2e-22
seq16268 122 2e-22
seq9317 122 2e-22
seq8967 122 2e-22
seq5419 122 2e-22
seq1038 122 2e-22
seq783 122 2e-22
seq5107 118 3e-21
seq18616 93.3 1e-13
seq10671 91.5 4e-13
seq4503 91.5 4e-13
seq13147 89.7 1e-12
seq11515 89.7 1e-12
seq856 89.7 1e-12
seq16108 87.8 4e-12
>seq22364
Length=2645
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| |||||||| || | ||||| || | || ||||| |||||||| || |||||
Sbjct 2189 ATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGACGTTG 2130
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 2129 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 2070
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 2069 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 2010
>seq16268
Length=4329
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 3180 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 3239
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 3240 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 3299
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 3300 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 3359
>seq9317
Length=8507
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 941 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 882
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 881 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 822
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 821 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 762
>seq8967
Length=8834
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 6521 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 6580
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 6581 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 6640
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 6641 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 6700
>seq5419
Length=14078
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 13741 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 13682
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 13681 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 13622
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 13621 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 13562
>seq1038
Length=34009
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 17483 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 17424
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| ||||||||||||
Sbjct 17423 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 17364
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 17363 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 17304
>seq783
Length=38083
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | ||||||||| |||||||| || |||||
Sbjct 21105 ATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTG 21046
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| |||||||||||
Sbjct 21045 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 20986
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 20985 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 20926
>seq5107
Length=14694
Score = 118 bits (130), Expect = 3e-21
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593
|||||| || ||||| || | ||||| || | |||||||| |||||||| || |||||
Sbjct 12793 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 12734
Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|| || || || || || ||||| || |||||||| ||| ||| |||||||||||
Sbjct 12733 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 12674
Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||| || || ||||||||||| || || | ||||| | || ||||||||
Sbjct 12673 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 12614
>seq18616
Length=3563
Score = 93.3 bits (102), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct 2260 AAGATTTGTCCATCGGTAATTGAAATAACGTTTGTTGGAATATAAGCAGAAACGTCACCA 2201
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571
||||| || || | || ||||| ||||| || ||||| ||
Sbjct 2200 GCTTGGGTCTCAATAATTGGTAAAGCTGTAAGAGATCCTCC 2160
>seq10671
Length=7258
Score = 91.5 bits (100), Expect = 4e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648
|| || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| ||
Sbjct 3303 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 3244
Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708
||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| |
Sbjct 3243 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 3184
Query 225709 TGCATTTT 225716
||||| ||
Sbjct 3183 TGCATATT 3176
>seq4503
Length=16266
Score = 91.5 bits (100), Expect = 4e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648
|| || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| ||
Sbjct 7800 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATC 7741
Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708
||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| |
Sbjct 7740 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 7681
Query 225709 TGCATTTT 225716
||||| ||
Sbjct 7680 TGCATATT 7673
>seq13147
Length=5676
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || ||||| |||||||| ||||| ||||| ||| || ||||
Sbjct 4953 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5012
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|| ||||| || | ||| || || | ||||| ||||| || ||||||||||| | |||
Sbjct 5013 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5072
Query 225706 ACTTGCATT 225714
| |||||||
Sbjct 5073 ATTTGCATT 5081
>seq11515
Length=6677
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || ||||| |||||||| ||||| ||||| ||| || ||||
Sbjct 5950 AGGCGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5891
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|| ||||| || | ||| || || | ||||| ||||| || ||||||||||| | |||
Sbjct 5890 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5831
Query 225706 ACTTGCATT 225714
| |||||||
Sbjct 5830 ATTTGCATT 5822
>seq856
Length=36659
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || ||||| |||||||| ||||| ||||| ||| || ||||
Sbjct 5677 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5618
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|| ||||| || | ||| || || | ||||| ||||| || ||||||||||| | |||
Sbjct 5617 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5558
Query 225706 ACTTGCATT 225714
| |||||||
Sbjct 5557 ATTTGCATT 5549
>seq16108
Length=4390
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||||||||| ||||| || ||||| ||||| || ||||| ||||| || |||||
Sbjct 2305 AAGATTTGACCATCGGTAATTGAAATAACGTTTGTTGGAATATATGCAGACACGTCACCA 2246
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571
||||| || || | || ||||| ||||| || ||||| ||
Sbjct 2245 GCTTGAGTCTCAATAATTGGTAAAGCTGTAAGAGATCCTCC 2205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192130943300024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |