Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq22364 122 2e-22 seq16268 122 2e-22 seq9317 122 2e-22 seq8967 122 2e-22 seq5419 122 2e-22 seq1038 122 2e-22 seq783 122 2e-22 seq5107 118 3e-21 seq18616 93.3 1e-13 seq10671 91.5 4e-13 seq4503 91.5 4e-13 seq13147 89.7 1e-12 seq11515 89.7 1e-12 seq856 89.7 1e-12 seq16108 87.8 4e-12 >seq22364 Length=2645 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| |||||||| || | ||||| || | || ||||| |||||||| || ||||| Sbjct 2189 ATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGACGTTG 2130 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 2129 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 2070 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 2069 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 2010 >seq16268 Length=4329 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 3180 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 3239 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 3240 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 3299 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 3300 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 3359 >seq9317 Length=8507 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 941 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 882 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 881 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 822 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 821 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 762 >seq8967 Length=8834 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 6521 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 6580 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 6581 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 6640 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 6641 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 6700 >seq5419 Length=14078 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 13741 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 13682 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 13681 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 13622 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 13621 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 13562 >seq1038 Length=34009 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 17483 ATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 17424 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| |||||||||||| Sbjct 17423 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 17364 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 17363 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 17304 >seq783 Length=38083 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | ||||||||| |||||||| || ||||| Sbjct 21105 ATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTG 21046 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 21045 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 20986 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 20985 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 20926 >seq5107 Length=14694 Score = 118 bits (130), Expect = 3e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| || | ||||| || | |||||||| |||||||| || ||||| Sbjct 12793 ATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTG 12734 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 12733 CTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 12674 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || ||||||||||| || || | ||||| | || |||||||| Sbjct 12673 CGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTGCAT 12614 >seq18616 Length=3563 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct 2260 AAGATTTGTCCATCGGTAATTGAAATAACGTTTGTTGGAATATAAGCAGAAACGTCACCA 2201 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 ||||| || || | || ||||| ||||| || ||||| || Sbjct 2200 GCTTGGGTCTCAATAATTGGTAAAGCTGTAAGAGATCCTCC 2160 >seq10671 Length=7258 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| || Sbjct 3303 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 3244 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| | Sbjct 3243 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 3184 Query 225709 TGCATTTT 225716 ||||| || Sbjct 3183 TGCATATT 3176 >seq4503 Length=16266 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| ||||||||||||||||| || || ||| ||| ||| || Sbjct 7800 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATC 7741 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| |||| ||| || || | ||||| ||||| || ||||| || |||| ||| | Sbjct 7740 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 7681 Query 225709 TGCATTTT 225716 ||||| || Sbjct 7680 TGCATATT 7673 >seq13147 Length=5676 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 4953 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5012 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 5013 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5072 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 5073 ATTTGCATT 5081 >seq11515 Length=6677 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 5950 AGGCGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5891 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 5890 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5831 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 5830 ATTTGCATT 5822 >seq856 Length=36659 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || ||||| |||||||| ||||| ||||| ||| || |||| Sbjct 5677 AGACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 5618 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||| || || | ||||| ||||| || ||||||||||| | ||| Sbjct 5617 ATAGTGTCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAG 5558 Query 225706 ACTTGCATT 225714 | ||||||| Sbjct 5557 ATTTGCATT 5549 >seq16108 Length=4390 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||| ||||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 2305 AAGATTTGACCATCGGTAATTGAAATAACGTTTGTTGGAATATATGCAGACACGTCACCA 2246 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 ||||| || || | || ||||| ||||| || ||||| || Sbjct 2245 GCTTGAGTCTCAATAATTGGTAAAGCTGTAAGAGATCCTCC 2205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192130943300024