Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13147 93.3 1e-13 seq11515 93.3 1e-13 seq856 93.3 1e-13 seq18229 87.8 4e-12 seq16001 87.8 4e-12 seq12421 87.8 4e-12 seq659 87.8 4e-12 seq91 87.8 4e-12 seq10671 84.2 5e-11 seq4503 84.2 5e-11 >seq13147 Length=5676 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | | Sbjct 5229 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 5288 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 5289 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 5348 Query 152102 CATTTT 152107 ||| || Sbjct 5349 CATATT 5354 >seq11515 Length=6677 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | | Sbjct 4802 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4743 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 4742 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4683 Query 152102 CATTTT 152107 ||| || Sbjct 4682 CATATT 4677 >seq856 Length=36659 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | | Sbjct 4859 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4800 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 4799 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4740 Query 152102 CATTTT 152107 ||| || Sbjct 4739 CATATT 4734 >seq18229 Length=3682 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 1766 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1707 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647 Query 152102 CATTTT 152107 ||| || Sbjct 1646 CATATT 1641 >seq16001 Length=4432 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 2075 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 2016 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956 Query 152102 CATTTT 152107 ||| || Sbjct 1955 CATATT 1950 >seq12421 Length=6087 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 1092 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1033 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973 Query 152102 CATTTT 152107 ||| || Sbjct 972 CATATT 967 >seq659 Length=40447 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || || | || | | | Sbjct 38419 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATGGT 38478 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 38479 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 38538 Query 152102 CATTTT 152107 ||| || Sbjct 38539 CATATT 38544 >seq91 Length=67459 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 15191 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 15132 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072 Query 152102 CATTTT 152107 ||| || Sbjct 15071 CATATT 15066 >seq10671 Length=7258 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||||||||||| || ||| |||||||| ||||||||||| || ||| | || | | Sbjct 3301 CTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATTGT 3242 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| || || ||||||||||| || || || || || | ||||| ||||||| ||| Sbjct 3241 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 3182 Query 152102 CATTTT 152107 ||| || Sbjct 3181 CATATT 3176 >seq4503 Length=16266 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||||||||||| || ||| |||||||| ||||||||||| || ||| | || | | Sbjct 7798 CTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATCGT 7739 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| || || ||||||||||| || || || || || | ||||| ||||||| ||| Sbjct 7738 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 7679 Query 152102 CATTTT 152107 ||| || Sbjct 7678 CATATT 7673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153433535913516