Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq13147 93.3 1e-13
seq11515 93.3 1e-13
seq856 93.3 1e-13
seq18229 87.8 4e-12
seq16001 87.8 4e-12
seq12421 87.8 4e-12
seq659 87.8 4e-12
seq91 87.8 4e-12
seq10671 84.2 5e-11
seq4503 84.2 5e-11
>seq13147
Length=5676
Score = 93.3 bits (102), Expect = 1e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
|||||| || | | || |||||||| |||||||||||| || ||| | || | | |
Sbjct 5229 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 5288
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| |||
Sbjct 5289 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 5348
Query 152102 CATTTT 152107
||| ||
Sbjct 5349 CATATT 5354
>seq11515
Length=6677
Score = 93.3 bits (102), Expect = 1e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
|||||| || | | || |||||||| |||||||||||| || ||| | || | | |
Sbjct 4802 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4743
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| |||
Sbjct 4742 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4683
Query 152102 CATTTT 152107
||| ||
Sbjct 4682 CATATT 4677
>seq856
Length=36659
Score = 93.3 bits (102), Expect = 1e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
|||||| || | | || |||||||| |||||||||||| || ||| | || | | |
Sbjct 4859 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 4800
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| |||
Sbjct 4799 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 4740
Query 152102 CATTTT 152107
||| ||
Sbjct 4739 CATATT 4734
>seq18229
Length=3682
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
||| || || | || ||| || || || |||||||||||| || ||| |||| | | |
Sbjct 1766 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1707
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| || || |||||||||||||| || ||||||||||| || || | |||
Sbjct 1706 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1647
Query 152102 CATTTT 152107
||| ||
Sbjct 1646 CATATT 1641
>seq16001
Length=4432
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
||| || || | || ||| || || || |||||||||||| || ||| |||| | | |
Sbjct 2075 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 2016
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| || || |||||||||||||| || ||||||||||| || || | |||
Sbjct 2015 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 1956
Query 152102 CATTTT 152107
||| ||
Sbjct 1955 CATATT 1950
>seq12421
Length=6087
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
||| || || | || ||| || || || |||||||||||| || ||| |||| | | |
Sbjct 1092 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 1033
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| || || |||||||||||||| || ||||||||||| || || | |||
Sbjct 1032 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 973
Query 152102 CATTTT 152107
||| ||
Sbjct 972 CATATT 967
>seq659
Length=40447
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
|||||| || | | || |||||||| |||||||||||| || || | || | | |
Sbjct 38419 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATGGT 38478
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| |||
Sbjct 38479 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 38538
Query 152102 CATTTT 152107
||| ||
Sbjct 38539 CATATT 38544
>seq91
Length=67459
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
||| || || | || ||| || || || |||||||||||| || ||| |||| | | |
Sbjct 15191 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 15132
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| ||| ||| || || |||||||||||||| || ||||||||||| || || | |||
Sbjct 15131 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 15072
Query 152102 CATTTT 152107
||| ||
Sbjct 15071 CATATT 15066
>seq10671
Length=7258
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
||||||||||| || ||| |||||||| ||||||||||| || ||| | || | |
Sbjct 3301 CTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATTGT 3242
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
||| || || ||||||||||| || || || || || | ||||| ||||||| |||
Sbjct 3241 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 3182
Query 152102 CATTTT 152107
||| ||
Sbjct 3181 CATATT 3176
>seq4503
Length=16266
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
||||||||||| || ||| |||||||| ||||||||||| || ||| | || | |
Sbjct 7798 CTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATCGT 7739
Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
||| || || ||||||||||| || || || || || | ||||| ||||||| |||
Sbjct 7738 GTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATCTG 7679
Query 152102 CATTTT 152107
||| ||
Sbjct 7678 CATATT 7673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153433535913516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |