Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1949 168 7e-37 seq8748 165 8e-36 seq13211 156 4e-33 seq545 149 7e-31 seq6 145 8e-30 seq261 109 6e-19 seq4150 82.4 8e-11 seq3799 82.4 8e-11 >seq1949 Length=26475 Score = 168 bits (186), Expect = 7e-37 Identities = 327/487 (67%), Gaps = 38/487 (8%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 12120 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 12061 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 12060 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 12001 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 12000 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 11941 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | ||||||| |||| Sbjct 11940 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCA 11881 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA----- 23722 |||| || | | | || | |||| | ||||| ||| || || | Sbjct 11880 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 11821 Query 23723 -CACACTCAATTGT----TTCAATTGCTTT----TAAGAGAAAAGTTTTTT--------- 23764 || |||| | | | || || |||| || | |||| |||||| Sbjct 11820 TCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAA 11761 Query 23765 ------------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATACATTT 23809 |||| | |||| | ||||| |||||||||| | |||||||| Sbjct 11760 GAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTT 11701 Query 23810 CAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATT 23869 | ||||||||||||||||||||||| ||||| ||||||||||| | |||||| | | || Sbjct 11700 CTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTT 11641 Query 23870 GAACATC 23876 |||| || Sbjct 11640 GAACTTC 11634 >seq8748 Length=9037 Score = 165 bits (182), Expect = 8e-36 Identities = 326/487 (67%), Gaps = 38/487 (8%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 8742 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 8683 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 8682 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 8623 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 8622 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 8563 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 8562 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCA 8503 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA----- 23722 |||| || | | | || | |||| | ||||| ||| || || | Sbjct 8502 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 8443 Query 23723 -CACACTCAATTGT----TTCAATTGCTTT----TAAGAGAAAAGTTTTTT--------- 23764 || |||| | | | || || |||| || | |||| |||||| Sbjct 8442 TCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTTTAATCTGAA 8383 Query 23765 ------------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATACATTT 23809 |||| | |||| | ||||| |||||||||| | |||||||| Sbjct 8382 GAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTT 8323 Query 23810 CAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATT 23869 | ||||||||||||||||||||||| ||||| ||||||||||| | |||||| | | || Sbjct 8322 CTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTT 8263 Query 23870 GAACATC 23876 |||| || Sbjct 8262 GAACTTC 8256 >seq13211 Length=5644 Score = 156 bits (172), Expect = 4e-33 Identities = 327/492 (66%), Gaps = 43/492 (9%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 4852 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 4793 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 4792 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 4733 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 4732 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 4673 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| |||||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 4672 GCAAAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCA 4613 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727 |||| || | | | || | |||| | ||||| ||| || || | | | Sbjct 4612 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 4553 Query 23728 TCA---------ATTGTTTCAA------TTG--CTTTTAAGAGAAA---AGTTTTTT--- 23764 ||| || | | || ||| || |||| | ||| | |||||| Sbjct 4552 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAAT 4493 Query 23765 -----------------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATA 23804 |||| | |||| | ||||| |||||||||| | ||| Sbjct 4492 CTAAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATA 4433 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 |||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||| || | Sbjct 4432 CATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGG 4373 Query 23865 CAATTGAACATC 23876 | |||||| || Sbjct 4372 TATTTGAACTTC 4361 >seq545 Length=42957 Score = 149 bits (164), Expect = 7e-31 Identities = 325/493 (66%), Gaps = 44/493 (9%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 28676 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 28617 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| || || | || ||| |||||||| | ||| || |||||||| | | ||| Sbjct 28616 TTCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 28557 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| | || ||||| || | |||||| |||||| Sbjct 28556 AATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCA 28497 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 28496 GCAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCA 28437 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727 |||| || | | | || | |||| | ||||| ||| || || | | | Sbjct 28436 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 28377 Query 23728 TCA---------ATTGTTTCAA------TTG--CTTTTAAGAGAAAA-GTTTTTTCTTCA 23769 ||| || | | || ||| || |||| | |||| |||||| || | Sbjct 28376 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAA 28317 Query 23770 TT--------------------------ATCTGTTATATATGTATCAATTAGTAAACTAT 23803 || |||| | ||||| |||||||||| | || Sbjct 28316 TTTAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAAT 28257 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 ||||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||| || | Sbjct 28256 ACATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTG 28197 Query 23864 ACAATTGAACATC 23876 | |||||| || Sbjct 28196 GTATTTGAACTTC 28184 >seq6 Length=123133 Score = 145 bits (160), Expect = 8e-30 Identities = 322/485 (66%), Gaps = 36/485 (7%) Strand=Plus/Plus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| | | |||||||| ||||| ||| | | ||| || Sbjct 115680 TTTTCAATATCAACAGCCTGTCGAATTATTTCCTCAATACGTTCATTCTTTGGTTTATTA 115739 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 115740 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 115799 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | || ||||| || || ||||| || | |||||| |||||| Sbjct 115800 AATTCATTACTTTGTGTCAGCCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 115859 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| | ||||| || | |||||| |||| Sbjct 115860 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGTGGCAAAAGCAATGAGACGTTCACCA 115919 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA----- 23722 |||| || | | | || | |||| | ||| | ||| || || | Sbjct 115920 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCATTCAGCTTTTTTCTTGATAAAA 115979 Query 23723 -CACACTCAATTGT----TTCAATTGCTTT----TAAGAGAAAAGTTTTT--TC------ 23765 || | |||| | | || || |||| || | |||| ||||| || Sbjct 115980 TCAAATTCAAATATAGCATTAAACAACTTTGAACTATTAAAAAATTTTTTAATCTAAAAA 116039 Query 23766 -----------TTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCA 23811 |||| | |||| | ||||| |||||||||| | ||||||||| Sbjct 116040 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 116099 Query 23812 GAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGA 23871 ||||||||||||||||||||||| ||||| ||||||||||| | |||||| | | |||| Sbjct 116100 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGA 116159 Query 23872 ACATC 23876 || || Sbjct 116160 ACTTC 116164 >seq261 Length=53585 Score = 109 bits (120), Expect = 6e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 49078 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 49137 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 49138 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 49197 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 49198 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 49257 Query 23608 GCAAATGATCCGGAAAAGAA 23627 ||||| ||| || ||||| Sbjct 49258 GCAAAACTTCCAGAGAAGAA 49277 >seq4150 Length=17270 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 |||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| ||||| Sbjct 7991 CATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATATGGAT 7932 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAATTCTTGTATT 139557 |||| |||| |||| |||| |||||||| || || ||| | ||| ||| || | Sbjct 7931 TGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCTGCCTA 7872 Query 139558 GCTAGTGAACTAATGAAAATATTTA 139582 ||| | ||| | | ||||| |||| Sbjct 7871 GCTTGGGAATTTAACAAAATTTTTA 7847 >seq3799 Length=18352 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 |||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| ||||| Sbjct 4856 CATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATATGGAT 4915 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTAT 139532 |||| |||| ||||| |||| |||||||| || || Sbjct 4916 TGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 4950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521317238754400