Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq12694 98.7 1e-15 seq57627 95.1 1e-14 seq12895 95.1 1e-14 seq49867 86.0 7e-12 >seq12694 Length=2124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830 |||| | ||||| ||||||||||| |||||||| || || ||||| || || || | | Sbjct 703 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 644 Query 54831 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATT 54890 ||||||| || || ||||||| | || || | ||| || | || | | ||||||| Sbjct 643 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 584 Query 54891 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 54923 | || |||||||||||| |||| || ||| |||| Sbjct 583 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 550 >seq57627 Length=208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||||||||| || ||||| | |||||| | || || |||||| | ||| ||||| Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 52 >seq12895 Length=2090 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830 |||| | || || ||||||||||| |||||||| || || ||||| || || || | | Sbjct 696 TAAAAACCTTCTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 637 Query 54831 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATT 54890 ||||||| || || ||||||| | || || | ||| || | || | | ||||||| Sbjct 636 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 577 Query 54891 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 54923 | || |||||||||||| |||| || ||| |||| Sbjct 576 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 543 >seq49867 Length=286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 54214 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 |||| ||||| ||||||||||||||| ||||| || ||||| || || ||||| | Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 54274 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 || |||||||| | ||| || || || || || || ||| ||| || || Sbjct 63 AGAACCTGAAGCACGAATTGAATGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAAT 122 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 54393 | || || || || | || ||| | || || || || ||| | | ||| ||| Sbjct 123 ATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAG 182 Query 54394 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 54453 | |||||| ||| | ||| |||| | || ||||| || ||||| || ||||| || Sbjct 183 CAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGC 242 Query 54454 GTGCGTAAACCA 54465 ||| |||||||| Sbjct 243 GTGAGTAAACCA 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593285986462080