Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq57627 95.1 1e-14 seq8547 86.0 6e-12 >seq57627 Length=208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/119 (78%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| |||||||||||| |||| | ||||||||||||||||||||| || || || Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTT 16615 || ||||| |||||||| || | ||| || | |||||| ||||| ||| ||||| || Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTT 53 >seq8547 Length=3126 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 || |||||||||||| | ||| | |||||| || | | ||||| || || ||| Sbjct 279 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 220 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 || || ||||| || ||||| || | |||||| || || ||||| ||||| || Sbjct 219 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 160 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 ||||||||| ||||| |||||||| |||| | || ||||| Sbjct 159 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACC 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462172654945600