Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8547 91.5 1e-13 seq3111 87.8 2e-12 >seq8547 Length=3126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 127 CTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 186 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| ||||| || ||||| || || || || || || || Sbjct 187 TGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 246 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || || || ||| |||||||| || ||| Sbjct 247 GATGAAGGACTTCATCGAGATTTTGCTTGTCTA 279 >seq3111 Length=6167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || || || |||||| |||| ||||| | || Sbjct 6166 ATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATCT 6107 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | ||| ||||||||||||| | || || || ||| Sbjct 6106 GACACTATAGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCACCAGATCAG 6047 Query 31313 CAGCGTCT 31320 |||||||| Sbjct 6046 CAGCGTCT 6039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445439341192320