Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12694 98.7 1e-15 seq49867 96.9 4e-15 seq12895 93.3 5e-14 >seq12694 Length=2124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 703 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 644 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 643 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 584 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 583 CAACAGTTGTTACTCCAGTATAAATGCCT 555 >seq49867 Length=286 Score = 96.9 bits (106), Expect = 4e-15 Identities = 175/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 63452 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT--- 63508 |||| ||||| ||||||||||||||| || || || | ||||| || || ||||| Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 | | ||| | |||||||| | ||| || || || ||||| || ||| ||| || Sbjct 63 AGAACCTGAA---GCACGAATTGAATGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGA 119 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 || | || || || || | || ||| | || ||||| || ||| | | ||| Sbjct 120 AATATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGA 179 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 ||| | |||||| ||| | ||| |||| | || ||||| || ||||| || ||||| Sbjct 180 AAGCAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGA 239 Query 63689 AGCGTGCGTAAACCA 63703 ||||| |||||||| Sbjct 240 GGCGTGAGTAAACCA 254 >seq12895 Length=2090 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | || || ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 696 TAAAAACCTTCTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 637 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 636 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 577 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 576 CAACAGTTGTTACTCCAGTATAAATGCCT 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629355502826880