Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq57627 98.7 9e-16 seq8547 98.7 9e-16 seq17717 91.5 1e-13 >seq57627 Length=208 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| | | ||| ||||| |||||| |||||||||||||||||||||||| ||||| Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||||||||||||| ||||| || ||||||| Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTG 80 >seq8547 Length=3126 Score = 98.7 bits (108), Expect = 9e-16 Identities = 222/329 (67%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||||||| |||| ||| || || ||||| | ||| ||| ||| |||| || Sbjct 358 CCTTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTAT 299 Query 11607 GTAAT-AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 || | ||||| | || | || ||| |||||||| | ||| | ||||| |||| | Sbjct 298 -TATTCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAA 240 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 |||| ||||||| ||| | ||| ||||| | || ||||| |||| |||||| || Sbjct 239 ATTAATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATT 180 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 |||||||| ||||| |||||||| ||||| || || ||||| || | | | ||| Sbjct 179 GCAGCAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCA 120 Query 11786 CCATAT--ACCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| || | ||| || |||| |||| |||||||||||||| || || | Sbjct 119 CCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATA 60 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 | || | | |||||| |||||||| Sbjct 59 AAATCAAATTCGAATATAGCATTAAATAA 31 >seq17717 Length=1442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 37689 CAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAAT 37748 ||||| ||| || | | ||| || |||| |||||| || | || ||| | ||| Sbjct 298 CAACGCAATCGAAGCCAAATTGCAAACAGAAACTTCTTCAGGAGAAGTATATTCAACAAT 239 Query 37749 CTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATT 37808 || ||||| ||||| || |||||||||||||||| |||| || ||||| |||| Sbjct 238 TTCAGTACAAAGATTTGAGCATTTAATTGTTCCCAAATTTTTTTGGTTTGATTTACTATT 179 Query 37809 ACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 ||||| |||||| || | ||||| || |||| |||||||||||| Sbjct 178 ACAAGCATCTTTGTAGACCATATATGGAATTCCAGTTTCTATTTGAGC 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468181043354240