Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12694 104 3e-17 seq49867 100 4e-16 seq12895 98.7 1e-15 >seq12694 Length=2124 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 703 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 644 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 643 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 584 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 583 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 550 >seq49867 Length=286 Score = 100 bits (110), Expect = 4e-16 Identities = 189/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183 |||| ||||| ||||||||||||||| ||||| || | ||||| || || ||||| | Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 80184 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 || |||||||| | ||| || || || ||||| || ||| ||| || || Sbjct 63 AGAACCTGAAGCACGAATTGAATGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAAT 122 Query 80244 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 | || || || || | || ||| | || || || || ||| ||| ||| ||| Sbjct 123 ATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAG 182 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 | |||||| ||| | ||| |||| | || ||||| || ||||| || ||||| || Sbjct 183 CAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGC 242 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401 ||| |||||||| || || |||||||| |||| Sbjct 243 GTGAGTAAACCAACGCTCGCCCATGAGATTGTAAGTCT 280 >seq12895 Length=2090 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | || || ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 696 TAAAAACCTTCTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 637 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 636 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 577 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 576 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717741806181440