Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12694 107 3e-18 seq12895 105 9e-18 seq49867 89.7 7e-13 seq57627 84.2 3e-11 >seq12694 Length=2124 Score = 107 bits (118), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 703 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 644 Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 643 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 584 Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916 | || |||||||||||| |||| || ||| |||| Sbjct 583 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 550 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 1697 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1638 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 1637 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 1579 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 1578 ACGATCATAAATAATTACTGAATTGAGTTT 1549 >seq12895 Length=2090 Score = 105 bits (116), Expect = 9e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 |||||||| || || |||||||| ||||||||||| || || ||||| | || ||| Sbjct 1634 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1575 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 1574 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 1516 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || |||||||| || ||||||||||| Sbjct 1515 ACGATCATAAATAATTACTGAATTGAGTTT 1486 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 |||| | || || ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 696 TAAAAACCTTCTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 637 Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 636 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 577 Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916 | || |||||||||||| |||| || ||| |||| Sbjct 576 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 543 >seq49867 Length=286 Score = 89.7 bits (98), Expect = 7e-13 Identities = 189/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 72207 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266 |||| ||||| ||||||||||||||| ||||| || ||||| || || ||||| | Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 72267 GCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 72324 || |||||||| | || ||| || || || ||||| || ||| ||| || Sbjct 63 AGAACCTGAAGCACGAATTGAATG--AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAA 120 Query 72325 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 72384 || | || || || || | || ||| | || || || || ||| | | ||| | Sbjct 121 ATATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAA 180 Query 72385 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 72444 || | |||||| ||| | ||| |||| | || ||||| || ||||| || ||||| Sbjct 181 AGCAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAG 240 Query 72445 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 72484 ||||| |||||||| || || |||||||| |||| Sbjct 241 GCGTGAGTAAACCAACGCTCGCCCATGAGATTGTAAGTCT 280 >seq57627 Length=208 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| ||||| || || |||||||||||||||||| |||||||| || Sbjct 171 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 112 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || |||||||| || ||||| | ||||| | | || |||||| | ||| ||||| Sbjct 111 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 52 Query 42445 A 42445 | Sbjct 51 A 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670646785168960