Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_004683.1 Length=57050 Score E Sequences producing significant alignments: (Bits) Value seq5531 104 9e-18 >seq5531 Length=4352 Score = 104 bits (114), Expect = 9e-18 Identities = 219/324 (68%), Gaps = 11/324 (3%) Strand=Plus/Minus Query 47898 ATTGAGTGGACCGACGCCACATGGAATCCCGTCACGGGCTGCACGAAGCTGAGTCCAGCC 47957 || || ||||| || || || ||||| || || |||||||| |||||| | | | Sbjct 413 ATCGAATGGACGGATGCGACGTGGAACCCGGTAACGGGCTGTACGAAGATCA-------C 361 Query 47958 AGCCCCGGATGCCAAAACTGCTATGCGTCAACATTCGCTGAGCGATTCCGCGGCACCCCG 48017 ||| || ||| | ||||||||||| | || | || || | ||||||| ||| Sbjct 360 GGCC--GGTTGCGACAACTGCTATGCAGAACGCTTTTCGGAACGCTGGCGCGGCATCCCT 303 Query 48018 GGGCACTACTTCGAGCGCGGGTTCGACGTGCAGCTCCGGTACGACAAACTGCTGCAGCCG 48077 || ||| ||||||| || ||||| || || ||| || || |||||| Sbjct 302 GGCCACCCGTTCGAGCATGGTTTCGATCTGACACTACGGCCTGAGCGCCTCGCCCAGCCG 243 Query 48078 ATGAGGTGGCGCCGGCCCAGGCGGATCTTCGTCAACTCAATGTCCGACCTGTTCCACGAC 48137 || ||| |||||| || ||||||||| ||||| ||||| |||||||||||| | Sbjct 242 CTGGCATGGAAGCGGCCCCGGATGATCTTCGTGAACTCCATGTCGGACCTGTTCCACAAG 183 Query 48138 CAGGTGCCCGACGCGTACATAGCCAAGGTGTTCGCCGTCATGGCGCTCGCGCCAC-AGCA 48196 ||||||||| | | ||| | | |||| |||| | |||| || || | || ||| Sbjct 182 AAGGTGCCCGGTACATTCATTGACCAGGTCTTCGACACGATGGAGCAGGC-CGACTGGCA 124 Query 48197 CACATTCCAGGTGCTCACCAAGCG 48220 ||||||||||| |||||||| Sbjct 123 TGTCTTCCAGGTGCTGACCAAGCG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182311237698624