Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq50049 107 4e-18 seq3537 105 2e-17 seq48301 102 2e-16 seq49882 98.7 2e-15 seq4398 95.1 3e-14 seq57627 86.0 1e-11 >seq50049 Length=284 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || ||||| | |||| Sbjct 100 TGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCAATGGTA 159 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 160 TCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 219 Query 104558 AT 104559 || Sbjct 220 AT 221 >seq3537 Length=5734 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 3259 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 3318 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 3319 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 3378 Query 104557 CATTTT 104562 ||| || Sbjct 3379 CATATT 3384 >seq48301 Length=303 Score = 102 bits (112), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||||||| || || || || || ||||||||||| ||||| ||||| || | || Sbjct 274 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 215 Query 104497 ATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||| | ||| ||| || || || ||||||||||| || |||||||| || ||||| || | Sbjct 214 ATC-CGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTT 156 Query 104556 GCATT 104560 ||||| Sbjct 155 GCATT 151 >seq49882 Length=286 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 185 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 126 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 125 TCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 66 Query 104558 AT 104559 || Sbjct 65 AT 64 >seq4398 Length=5060 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || || ||||| | ||| Sbjct 4737 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATGGT 4678 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || ||||| || ||||| Sbjct 4677 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATCTG 4618 Query 104557 CATTTTG 104563 ||| ||| Sbjct 4617 CATATTG 4611 >seq57627 Length=208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || || || | |||||||| ||||| || || ||||| ||||| Sbjct 63 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 122 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 123 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150532499468768