Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq55290 111 2e-20 seq27875 111 2e-20 >seq55290 Length=229 Score = 111 bits (122), Expect = 2e-20 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | |||| || ||||||||||||||||| |||||||| || | Sbjct 151 CGCAAAGCGCCATCGAAAAG-TCTTGCGTGATAACATCCAAGGAATTACCAAGCCGGCAA 93 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| |||| || | | || || |||| Sbjct 92 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATCTCCGGGCTCATTTACGAGGAGA 33 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 32 CTCGAGGTGTTCTGAAAGTCTTCCT 8 >seq27875 Length=775 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || | | | | | || |||||||||||||||||||| ||||| || || Sbjct 160 CGCTAAGCGCCACAGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 101 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || || | || || |||| Sbjct 100 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTGATTTACGAGGAGAC 41 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 40 TCGAGGTGTTCTGAAAGTCTTCCT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79021533836328