Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12694 102 1e-16 seq12895 98.7 1e-15 seq49867 89.7 6e-13 >seq12694 Length=2124 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 703 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 644 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 643 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 584 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 583 CAACAGTTGTTACTCCAGTATAAATGCCT 555 >seq12895 Length=2090 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | || || ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 696 TAAAAACCTTCTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 637 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 636 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 577 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 576 CAACAGTTGTTACTCCAGTATAAATGCCT 548 >seq49867 Length=286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 63401 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460 |||| ||||| ||||||||||||||| || || || | ||||| || || ||||| | Sbjct 3 ATTAAAAACTTGCAACATTGGAATAATTCCATTCGAATTTCCATTTGTTCCAGAGATCAA 62 Query 63461 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 || |||||||| | ||| || || || ||||| || ||| ||| || || Sbjct 63 AGAACCTGAAGCACGAATTGAATGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAAT 122 Query 63521 TAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 | || || || || | || ||| | || || || || ||| | | ||| ||| Sbjct 123 ATAAGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAG 182 Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 | |||||| ||| | ||| |||| | || ||||| || ||||| || ||||| || Sbjct 183 CAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGC 242 Query 63641 GTGCGTAAACCA 63652 ||| |||||||| Sbjct 243 GTGAGTAAACCA 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622490143639360