Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq22224 131 1e-25 seq25738 125 5e-24 seq34637 102 5e-17 seq31651 102 5e-17 seq13584 100 2e-16 seq5587 100 2e-16 seq6649 89.7 3e-13 >seq22224 Length=1079 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 149 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 208 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||||||||||||||||||| Sbjct 209 TGATCCATTCGTGCGCGTCACTAATTAGATGACGA 243 >seq25738 Length=870 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 644 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 585 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||||| Sbjct 584 TGTAATATTTAGCCTTA 568 >seq34637 Length=550 Score = 102 bits (112), Expect = 5e-17 Identities = 67/74 (91%), Gaps = 5/74 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 269 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 210 Query 25957 TAATCCTTTCATGC 25970 |||||| ||||||| Sbjct 209 TAATCCATTCATGC 196 >seq31651 Length=637 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 548 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 607 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 608 GCCAGTATTTAGCCTT 623 >seq13584 Length=1977 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || |||||||||||| || | ||||| ||||| |||||||| ||| | | ||| Sbjct 565 AATGTTAATCGTAATGTGCAAGATCCCTTCTATCGCTATAAAATGCCACGCCTTTTGGCC 624 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || || ||||| || ||||| || |||||||| || ||| || ||||||||| | ||| Sbjct 625 AAAGTTGAGGGAAAAGGAAATGGAATTAAAACTGTTGTTGCTAATATGCCTGAAATTGCT 684 Query 6294 AAGGCGCTCGGACGCCCT 6311 ||||| ||| |||||| Sbjct 685 AAGGCACTCTCTCGCCCT 702 >seq5587 Length=4320 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || |||||||||||| || | ||||| ||||| |||||||| ||| | | ||| Sbjct 4170 AATGTTAATCGTAATGTGCAAGATCCCTTCTATCGCTATAAAATGCCACGCCTTTTGGCC 4229 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || || ||||| || ||||| || |||||||| || ||| || ||||||||| | ||| Sbjct 4230 AAAGTTGAGGGAAAAGGAAATGGAATTAAAACTGTTGTTGCTAATATGCCTGAAATTGCT 4289 Query 6294 AAGGCGCTCGGACGCCCT 6311 ||||| ||| |||||| Sbjct 4290 AAGGCACTCTCTCGCCCT 4307 >seq6649 Length=3822 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||| |||| ||||||||| ||||||||||||| Sbjct 2016 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGGTCTCGT 1957 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||| |||| Sbjct 1956 AGGCGTATTTAGTCTTA 1940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334707593008376