Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq48301 100 2e-16 seq42683 87.8 2e-12 seq3537 87.8 2e-12 seq4398 82.4 6e-11 >seq48301 Length=303 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || || || | ||||| ||||||||| || | Sbjct 152 ATGCAAATTTTTGTTAAGACACTTACGGGAAAGACTATTACTCTGGAAGTGGAAGCCTCG 211 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 212 GATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCAG 271 Query 22339 CAACGTCT 22346 || ||||| Sbjct 272 CAGCGTCT 279 >seq42683 Length=382 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || || || || ||||||||||||| || | | Sbjct 170 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTTGAAGTTGAGGCATCG 229 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||| ||||| ||||| || || || Sbjct 230 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCGCCAGACCAG 289 Query 22339 CAACGTCT--TATATTTGCC 22356 || ||||| | | |||||| Sbjct 290 CAGCGTCTGGTTTGTTTGCC 309 >seq3537 Length=5734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 3386 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 3327 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 3326 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 3267 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 3266 ATCAACAGCGT 3256 >seq4398 Length=5060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 4612 AATATGCAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 4671 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || | | || |||||||||||||||||| || ||||| || ||| Sbjct 4672 TCTGATACCATCGAAAACGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 4731 Query 22336 CAACAACG 22343 || || || Sbjct 4732 CAGCAGCG 4739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419427744427240