Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq49882 114 2e-20 seq4398 107 4e-18 seq50049 102 2e-16 seq27592 98.7 2e-15 seq7417 93.3 8e-14 seq5344 89.7 9e-13 seq3111 87.8 3e-12 seq9496 86.0 1e-11 seq5570 86.0 1e-11 >seq49882 Length=286 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68336 TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGAT 68395 || ||| || || || ||||| ||||| ||||| |||||||| ||||||||| ||| || Sbjct 189 TCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAAT 130 Query 68396 GGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 ||| || | | ||| ||||| | |||||| || ||||||||||||||||| || || || Sbjct 129 GGTATCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGAT 70 Query 68456 CTGCAT 68461 |||||| Sbjct 69 CTGCAT 64 >seq4398 Length=5060 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || ||||||||||||||||||||||| |||||||| ||| |||||||| Sbjct 4736 TGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTCGATGGTA 4677 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | || ||||| | ||||| |||||||| || || ||||| ||||| |||||| Sbjct 4676 TCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATCTGC 4617 Query 68460 AT 68461 || Sbjct 4616 AT 4615 >seq50049 Length=284 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68336 TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGAT 68395 || ||| || || || || || ||||| ||||| |||||||| ||||||||| || || Sbjct 96 TCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCAAT 155 Query 68396 GGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 ||| || | | ||| ||||| | ||||| || ||||||||||||||||| || || || Sbjct 156 GGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGAT 215 Query 68456 CTGCAT 68461 |||||| Sbjct 216 CTGCAT 221 >seq27592 Length=787 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||||||||| ||||| |||||||| ||||||||||| || ||||||||||| || | Sbjct 180 TCCTCCGCGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTATAGTCAGC 121 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 ||| |||| || || || | |||||| || ||||| || Sbjct 120 GAGAGTCCGACCGTCCTCAAGCTGCTTGCCAGCGAAGAT 82 >seq7417 Length=3511 Score = 93.3 bits (102), Expect = 8e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||||||||| ||||| |||||||| ||||||||||| ||||||||||| || || | Sbjct 3331 TCCTCCGCGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGC 3390 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 ||| || | ||||| || | |||||| || || || || Sbjct 3391 GAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGAT 3429 >seq5344 Length=4458 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || || |||| |||||||||| Sbjct 899 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 958 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 959 CCCGCATCGGGC 970 >seq3111 Length=6167 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || |||||||||||||||||||| ||||| || |||||||| || || ||| Sbjct 6045 TGCTGATCTGGTGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTTTCTATAGTG 6104 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || ||||| | |||||| || || || || | || || ||||| || ||| Sbjct 6105 TCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 6164 Query 68460 ATT 68462 ||| Sbjct 6165 ATT 6167 >seq9496 Length=2859 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| || || |||||||| ||||| ||||||||||| ||||| || || || ||| Sbjct 1501 TGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGTG 1442 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || ||||| | || || || ||||| || | |||||||| || |||||| Sbjct 1441 TCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAAAATCTGC 1382 Query 68460 AT 68461 || Sbjct 1381 AT 1380 >seq5570 Length=4331 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| || || || ||||||||||||||||| || ||||| || || || ||| Sbjct 4273 TGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATTGTG 4214 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | ||| ||||| | |||||||| ||||| || | || || ||||| |||||| Sbjct 4213 TCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTTTTTACGAAGATCTGC 4154 Query 68460 AT 68461 || Sbjct 4153 AT 4152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920946205645120