Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4398 102 7e-17 seq3537 98.7 9e-16 seq17717 89.7 5e-13 seq9496 86.0 6e-12 seq42683 82.4 7e-11 >seq4398 Length=5060 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||| ||||| || || ||||||||||| || |||||||||||| || | ||| Sbjct 4743 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACGTTTTC 4684 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||||||||| ||||| | |||||| || || ||||| ||||| || Sbjct 4683 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAA 4624 Query 45332 AATTTGCAT 45340 || ||||| Sbjct 4623 GATCTGCAT 4615 >seq3537 Length=5734 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || || ||||| || || |||||||||||||||||| || | || Sbjct 3253 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 3312 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||| || |||||||||| ||||| ||||| ||||| |||||||| Sbjct 3313 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 3372 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 3373 AATCTGCAT 3381 >seq17717 Length=1442 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| |||||||||| || || || || ||| | || Sbjct 134 CAAATAGAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAAC 193 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | Sbjct 194 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACT 253 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 | | || |||| | || || ||||||||||||| |||||| Sbjct 254 TCTCCTGAAGAAGTTTCTGTTTGCAATTTGGCTTCGA-TTGCGT 296 >seq9496 Length=2859 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 1508 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 1449 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | |||||||| | ||| ||||| || |||| || || ||||| | ||| || ||||| Sbjct 1448 AATCGTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTCAAAGTCTTGACAAA 1389 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 1388 AATCTGCATC 1379 >seq42683 Length=382 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || |||||||| |||||||| || ||||| ||||||||||| ||||| ||| | Sbjct 294 CGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATC 235 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || || | ||| ||||| ||||| | || ||||| || | || || || |||||| Sbjct 234 GTATCCGATGCCTCAACTTCAAGAGTGATAGTCTTGCCTGTCAACGTCTTAACGAAAATT 175 Query 45336 TGCAT 45340 ||||| Sbjct 174 TGCAT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451671565252160