Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq51208 141 4e-28 seq2856 111 6e-19 seq3537 105 3e-17 seq10346 102 3e-16 seq4398 100 1e-15 seq32922 93.3 2e-13 seq9496 91.5 6e-13 seq5570 91.5 6e-13 seq28723 87.8 7e-12 seq48301 86.0 2e-11 seq42683 86.0 2e-11 >seq51208 Length=271 Score = 141 bits (156), Expect = 4e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 ||| ||| ||||||| ||| ||| |||| ||||||| ||||| || |||||| Sbjct 2 AAAGGAAGCAAACAGCCGAAGCTTATCTTGGCCATCCAGTTCGAGATGCTGTCGTTACTG 61 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 |||| || ||||| ||||| | ||| || |||||||||||||| || || || ||||||| Sbjct 62 TTCCAGCCTATTTTAATGACGGACAGCGTCAAGCAACTAAAGACGCTGGTCAGATTGCTG 121 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | | ||||| | |||||||| |||||||| ||||| |||||||| || |||||| Sbjct 122 GACTTAATGTATTGCGAATTATAAATGAACCAACAGCTGCTGCTCTGGCTTATGGA 177 >seq2856 Length=6443 Score = 111 bits (122), Expect = 6e-19 Identities = 120/156 (77%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 420810 AAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAACAA 420869 ||| |||||| || | | ||||||||||||||| | || ||||||||||||||| ||||| Sbjct 1720 AAAAACAACACTTCTCGCAGGCATATTTACACCCATAGCAAAAGTTTCAGTTGCAAACAA 1779 Query 420870 AACTTTAA-TTAAtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAATTA 420928 | ||||| | || |||||||| |||| | |||||||| |||||| | || || | | Sbjct 1780 TATTTTAACTAAACCTTTTTGAA-AAAGTAATTCAACAACTTCTTTAATTATTGGCAAAA 1838 Query 420929 TACCAGAATGATGATATGCCACACCTC---TACATA 420961 | |||||||| ||| || | ||||| |||||| Sbjct 1839 TTCCAGAATGGTGAACAGCAAAACCTCGTTTACATA 1874 >seq3537 Length=5734 Score = 105 bits (116), Expect = 3e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || |||||||||||||| || ||||| | ||| Sbjct 3381 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 3322 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | |||| ||||||||||||||| || || || || ||||||||| Sbjct 3321 GATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTGATCAA 3262 Query 391170 CAACGTTT 391177 || ||||| Sbjct 3261 CAGCGTTT 3254 >seq10346 Length=2631 Score = 102 bits (112), Expect = 3e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 |||||| |||| || ||||||| || |||| || || ||||| ||||| ||||| || Sbjct 1007 AGTTACGCATGCTGTGGTTACTGTCCCGACTTACTTTAACGATGCTCAACGTCAAGCTAC 1066 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| ||| || |||| | |||||| | || |||||||||||||| ||||| Sbjct 1067 CAAAGATGCTGGAACCATCTCTGGACTTAATGTTGTACGTATTATTAATGAACCGACAGC 1126 Query 451432 AGCTGCTCTAGCATATGGA 451450 || || |||| |||||| Sbjct 1127 TGCGGCAATAGCTTATGGA 1145 >seq4398 Length=5060 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || ||||| ||||| || |||||||| || || | ||| Sbjct 4615 ATGCAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCTTCT 4674 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | || |||||||||||| |||||||| |||||||||||||| Sbjct 4675 GATACCATCGAAAACGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 4734 Query 391170 CAACGTTTAATTTTC 391184 || || || ||||| Sbjct 4735 CAGCGATTGGTTTTC 4749 >seq32922 Length=598 Score = 93.3 bits (102), Expect = 2e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || ||||| || || |||||| | ||| |||| | | | ||||||| || ||| Sbjct 359 AAGATGAAGGAGACGGCAGAAAATTATCTTGGCACAAGCGCCCCAAATGCAGTCATCACT 418 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || || ||||| ||| | ||||| ||||| ||||||||||| || || |||||| Sbjct 419 GTCCCTGCCTACTTCAACGATTCTCAACGTCAAGCTACTAAAGATGCTGGTCAGATTGCT 478 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || | ||| | || | | |||||||| ||||| ||||| |||| ||||| Sbjct 479 GGACTTCGAGTTTTGCGTGTAGTCAATGAACCCACAGCTGCTGCATTAGCTTATGG 534 >seq9496 Length=2859 Score = 91.5 bits (100), Expect = 6e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || |||| || || |||||||| ||||| ||||| |||| Sbjct 1380 ATGCAGATTTTTGTCAAGACTTTGACCGGAAAGACTATTACGCTTGAAGTTGAGGCATCC 1439 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | |||| || |||||||||||||| || ||||| || |||||| Sbjct 1440 GACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGATCAA 1499 Query 391170 CAACGTTT 391177 || ||||| Sbjct 1500 CAGCGTTT 1507 >seq5570 Length=4331 Score = 91.5 bits (100), Expect = 6e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| ||||||| || || || |||||||| |||||| | ||| Sbjct 4152 ATGCAGATCTTCGTAAAAACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAAGCCTCT 4211 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | |||| ||||||||||| |||||||| || || || || || Sbjct 4212 GACACAATTGAAAATGTTAAGGCCAAAATTCAAGACAAGGAAGGTATCCCGCCGGACCAG 4271 Query 391170 CAACGTTT 391177 || ||||| Sbjct 4272 CAGCGTTT 4279 >seq28723 Length=739 Score = 87.8 bits (96), Expect = 7e-12 Identities = 132/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 96110 AAAAGTAC-TTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACA 96168 |||| ||| |||| ||| | || || || |||| |||| || | ||| || ||||| Sbjct 356 AAAATTACCTTTAGAAATAGTCAAAGCCGGCGTCCATTTATGTTGAAGAATGTCCAAACA 415 Query 96169 AATTGCACCTGT-AGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAG 96227 ||| ||| | | | || |||||||||||| ||||| | |||||||| |||| || | Sbjct 416 AAT-GCATCCCTCATTATCAATATTTGGATGGTAAATCTGTGTTTTAAAACTAATCTTTG 474 Query 96228 GAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCAT 96287 | || ||| | ||||| |||| ||||| |||||| ||| | || ||||| || | || Sbjct 475 GCGGTTTAAACGGATATTCTTGTGGAAAGTTAATTTTTAAGTAAAACACTCCTCCTTGAT 534 Query 96288 AGGG 96291 | || Sbjct 535 AAGG 538 >seq48301 Length=303 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| ||||| || || || ||||||||||| || || ||| | || Sbjct 151 AATGCAAATTTTTGTTAAGACACTTACGGGAAAGACTATTACTCTGGAAGTGGAAGCCTC 210 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| | | ||| || ||||| || ||||| || ||||| |||||||| Sbjct 211 GGATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCA 270 Query 391169 ACAACGT 391175 || ||| Sbjct 271 GCAGCGT 277 >seq42683 Length=382 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || |||| || || ||||| |||||||| ||||| |||| Sbjct 169 AATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATCACTCTTGAAGTTGAGGCATC 228 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| | ||| ||||||||||| || || || ||||| || || || Sbjct 229 GGATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCGCCAGACCA 288 Query 391169 ACAACGT 391175 || ||| Sbjct 289 GCAGCGT 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974232575795168