Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq53396 125 5e-23 seq35495 125 5e-23 seq40541 123 2e-22 seq51208 122 7e-22 seq48304 116 3e-20 seq53960 113 3e-19 seq35471 105 5e-17 seq10346 100 2e-15 seq32922 98.7 8e-15 seq36270 93.3 3e-13 seq13757 93.3 3e-13 seq44846 91.5 1e-12 seq1633 87.8 1e-11 seq20442 86.0 5e-11 >seq53396 Length=249 Score = 125 bits (138), Expect = 5e-23 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 ||||| || |||||||| ||||| | | ||| | ||| || | | || | ||| Sbjct 16 CGATTGTCGAAATCTTCGCCTCCAAGGTGAGTGTCTCCAACAGTCGACTTGACCTCAAAA 75 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||||||||| || ||||| || || ||| ||||||||||||| |||||||| Sbjct 76 ATACCATCTTCAATAGTCAAAATAGACACGTCAAAAGTTCCACCACCCAAGTCAAAAATC 135 Query 518141 AGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || || || || | ||||| || ||||| | |||||| |||| ||| |||||| Sbjct 136 AGAACGTTGCGCTC---GCCTTGGCGCTTCTTATCCACACCATAAGCAATAGCCGCAGCA 192 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTT 518253 ||||| || || || || | |||||||||||| |||| ||| |||| ||||| || Sbjct 193 GTTGGCTCGTTGATGATACGCAAAACATTAAGTCCAGAAATCGTTCCAGCATCCTT 248 >seq35495 Length=529 Score = 125 bits (138), Expect = 5e-23 Identities = 183/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 517422 ||| ||||| | ||||| || || || ||||| ||| ||| |||||||| | | Sbjct 256 ATTTTTATTCACCTTAGTCAAAGCTCTCTCTCCCTCATAAACTTGAATAGTAACAGCCGG 197 Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 517482 |||||||| |||||||| |||||| | ||| |||| |||||||| | ||| | Sbjct 196 CTGATTATCCGAATAAGTAGTAAATGTTTGGGAAGTTTTGTGGGGAATTGTAGCGTTGCG 137 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 |||| || |||||||| | || || || ||||||| ||| | |||||| ||||| || Sbjct 136 TTCAACAAGTTTGGTCATCACTCCCCCAGCCGTTTCTATACCCAAAGAAAGTGGAGTAAC 77 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTT 517601 ||||||||| | || || | | | | ||||| ||| |||| ||||||||||| Sbjct 76 ATCAACTAGAAGAACATCCTTAGTTGTCTCATCCCGAACCCCAGACAA-AATAGCTGCTT 18 Query 517602 GAATAGCAGCACCATA 517617 | | |||||| ||||| Sbjct 17 GTACAGCAGCCCCATA 2 >seq40541 Length=419 Score = 123 bits (136), Expect = 2e-22 Identities = 192/272 (71%), Gaps = 7/272 (3%) Strand=Plus/Minus Query 518098 CAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 518157 ||||| || |||||| |||||||| |||| |||||||| | || || || Sbjct 417 CAAAATAGACACATCAAAAGTTCCACCGCCCAAGTCAAAAATCAAGACGTTGTGCTC--- 361 Query 518158 GTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 | ||||| || ||||| | |||||| |||| ||| ||||||||||| || || || || Sbjct 360 GCCTTGGCCTTTCTTATCCAAACCATAAGCAATAGCCGCAGCAGTTGGGTCGTTGATGAT 301 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | ||| ||| |||| |||| ||| |||| ||||| || |||||||| | ||| || Sbjct 300 ACGCAAGACACTAAGTCCAGAAATCGTTCCAGCATCCTTTGTGGCTTGGCGTTGACTGTC 241 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 ||| || || || || ||||| || || ||||| | || ||| || | | | || Sbjct 240 GTTGAAGTAAGCTGGCACAGTGAT-ACAGCATCTTTAACGGTTTTTCCCAAAAATGCCTC 182 Query 518335 TGCCGTTTGTTTCATTTTACTTAAAATCATTG 518366 ||||||| ||||||||| | || | ||||| Sbjct 181 AGCCGTTTCATTCATTTTAGTCAAGACCATTG 150 >seq51208 Length=271 Score = 122 bits (134), Expect = 7e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| || | ||||||||| ||||||||||| ||||||| ||| ||| Sbjct 188 TTCTTATCCAATCCATAAGCCAGAGCAGCAGCTGTTGGTTCATTTATAATTCGCAATACA 129 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| || || |||||||| ||||| | ||| || |||||||| Sbjct 128 TTAAGTCCAGCAATCTGACCAGCGTCTTTAGTTGCTTGACGCTGTCCGTCATTAAAATAG 69 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || |||||||||| || ||||| ||| | |||| |||||| || ||||| Sbjct 68 GCTGGAACAGTAACGACAGCATCTCGAACTGGATGGCCAAGATAAGCTTCGGCTGTTTGC 9 Query 518345 TTCATTT 518351 ||| ||| Sbjct 8 TTCCTTT 2 >seq48304 Length=303 Score = 116 bits (128), Expect = 3e-20 Identities = 194/278 (70%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 ||||| ||||||||||| ||||| || | ||| | || | || | | || | ||| Sbjct 274 CGATTGTCAAAATCTTCGCCTCCAAAGTGAGTCT--CCAGCAGTCGACTTGACATCAAAA 217 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||||||||| || || || || ||| ||| ||||||| | || |||||||| Sbjct 216 ATTCCATCTTCAATAGTCAGAATAGATACGTCAAAAGTTCCACAGCACAAGTCAAAAATC 157 Query 518141 AGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 | || || || | | ||| || ||||| | |||||| ||| || |||||| Sbjct 156 AAAACGTTGTGCTC---GCCCTGGCCCTTCTTATCCAAACCATAATCAATGGCCGCAGCA 100 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||| || || || || | |||||| |||| |||| ||| |||| ||||| || ||| Sbjct 99 GTTGGCTCGTTGATGATACGCAAAACGATAAGTCCAGAAATCGTTCCAGCATCCTTTGTG 40 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 ||||| | ||| || || || || ||||| ||||| Sbjct 39 GCTTGGCGTTGACTGTCATTGAAGTACGCAGGCACAGT 2 >seq53960 Length=243 Score = 113 bits (124), Expect = 3e-19 Identities = 159/220 (72%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| |||||||||| || ||||| || |||||| |||||||| |||| |||||| Sbjct 26 AAAATACCATCTTCAATAGTCAAAATAGAAACATCAAAAGTTCCACCGCCCAAGTCAAAA 85 Query 518138 ATAAGTACATTCATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 518195 || | || || || ||| | | || ||||| | |||||| ||| || |||| Sbjct 86 ATCAAGACGTTGCGCTCGCATTGGCCT--TTCTTATCCAAACCATAGTCAATGGC-GCAG 142 Query 518196 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 518255 ||||||| || || || || | |||||||||||| |||| ||| | || ||||| || | Sbjct 143 CAGTTGGCTCGTTGATGATACGCAAAACATTAAGTCCAGAAATCGTCCCAGCATCCTTTG 202 Query 518256 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 ||||||| | ||| || || || || ||||| ||||| Sbjct 203 TGGCTTGGCGTTGACTGTCATTGAAGTACGCAGGCACAGT 242 >seq35471 Length=529 Score = 105 bits (116), Expect = 5e-17 Identities = 181/258 (70%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 517422 ||| ||||| | ||||| || | ||| || || ||| ||| |||||||| | | Sbjct 256 ATTTTTATTCACCTTAGTCAAAGCCCTTTCTCCTTCATAAACTTGAATAGTAACAGCCGG 197 Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 517482 |||||||| |||||||| ||||| | ||| |||| |||||||| | ||| | Sbjct 196 CTGATTATCCGAATAAGTAGTAAAGGTTTGGGAAGTTTTGTGGGGAATTGTAGCGTTGCG 137 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 |||| || |||||||||| || || || ||||||| || | |||||| ||||| || Sbjct 136 TTCAACAAGTTTGGTCATAACTCCCCCAGCCGTTTCTATTCCCAAAGAAAGTGGAGTAAC 77 Query 517543 ATCAACTAGGACAATAT--TTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGC 517599 ||||| || | || || |||| || | |||| ||| |||| ||||||||| Sbjct 76 GTCAACGAGAAGAACATCCTTTGTTGTCT--CATCCCGAACCCCAGACAA-AATAGCTGC 20 Query 517600 TTGAATAGCAGCACCATA 517617 ||| | |||||| ||||| Sbjct 19 TTGTACAGCAGCCCCATA 2 >seq10346 Length=2631 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| || | || ||||| || |||||||||||||| | | ||||||||| |||| Sbjct 1144 CCATAAGCTATTGCCGCAGCTGTCGGTTCATTAATAATACGTACAACATTAAGTCCAGAG 1085 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||| |||||||| || ||||| | ||| | ||||||||| || | || |||||| Sbjct 1084 ATGGTTCCAGCATCTTTGGTAGCTTGACGTTGAGCATCGTTAAAGTAAGTCGGGACAGTA 1025 Query 518297 ATAACGGCATCAGTTACTTC 518316 | || |||| || ||||| Sbjct 1024 ACCACAGCATGCGTAACTTC 1005 >seq32922 Length=598 Score = 98.7 bits (108), Expect = 8e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 ||| | |||||| || || |||||||| || |||||||| | | | |||||| ||| Sbjct 541 ATCCAAACCATAAGCTAATGCAGCAGCTGTGGGTTCATTGACTACACGCAAAACTCGAAG 482 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 |||||||| || ||||||||||| ||||| | ||| |||||||| || || ||||| Sbjct 481 TCCAGCAATCTGACCAGCATCTTTAGTAGCTTGACGTTGAGAATCGTTGAAGTAGGCAGG 422 Query 518290 AACAGTAATAACGGCAT 518306 ||||| || || |||| Sbjct 421 GACAGTGATGACTGCAT 405 >seq36270 Length=510 Score = 93.3 bits (102), Expect = 3e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||| |||||||| || || || || || | |||||||||||| ||| | Sbjct 510 CCATAAGCAATAGCCGCAGCAGTAGGCTCGTTGATGATACGCAAAACATTAAGTTCAGAA 451 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||| ||||| || |||||||| | ||| |||||||| || || || | || Sbjct 450 ATCGTTCCAGCATCCTTTGTGGCTTGGCGTTGACTGTCGTTAAAGTAGGCCGGCATGGTG 391 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 || || ||||| | || || || | | | || ||||||| || |||||| | Sbjct 390 ATGACAGCATCCTTAACGGTTTGGCCCAAAAATGCCTCAGCCGTTTCCTTTATTTTAGTC 331 Query 518357 AAAATCATTGATGAAATTT 518375 || | ||||| |||| || Sbjct 330 AAGACCATTGCCGAAACTT 312 >seq13757 Length=1946 Score = 93.3 bits (102), Expect = 3e-13 Identities = 125/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 |||| ||| ||||||||||||||| | |||||| | ||||| || || || ||| | ||| Sbjct 1353 TTAA-AGGCAAAGAAGGTCGTATTCGGGGAAATCTTATGGGCAAGCGAGTTGATTTCTCT 1411 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968 || || ||||| ||||| ||||||| ||| | || | || |||||||| || Sbjct 1412 GCGCGAACAGTCATTACGCCTGATCCAAATTTGCCTATTGATACTGTTGGTGTGCCGAGA 1471 Query 668969 ATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 669021 | ||| ||| | ||| | || ||| |||||||| || | ||||||||| Sbjct 1472 AGTATCGCTCAGAATTTAACATTTCCTGAAATTGTGACGCCATTTAATATTGA 1524 >seq44846 Length=349 Score = 91.5 bits (100), Expect = 1e-12 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 870801 TTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAA 870860 |||| ||||| ||||||||||||||||| ||| |||||||| |||| ||| | | |||| Sbjct 164 TTGTTGATTACTCTTCTCCAAATATTGCAAAACAAATGCATGTTGGTCATCTTCGTTCAA 223 Query 870861 CTATTATTGGTGAATCTATT 870880 |||| |||||||| |||||| Sbjct 224 CTATAATTGGTGATTCTATT 243 >seq1633 Length=8274 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 634439 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 634498 || ||||| |||||||||||| ||| ||| ||| | || || || | | || || Sbjct 660 ATCTCTGTCTGGAATAATGGTCGTGGAATTCCTGTTGTCATGCACAAGGTTGAAAAGATG 601 Query 634499 TGGGTACCATCAATGATTTTTGGAGAACTTT--TAACGTCTACTAATTACGATAAAAACG 634556 | || ||| ||||||||| | |||| || | || ||| | |||||| || | |||| Sbjct 600 TATGTGCCAGAAATGATTTTCG--GAACGTTGCTTACCTCTTCAAATTACAATGACAACG 543 Query 634557 AGGAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 634610 || |||| || ||||||| |||||||| ||| |||||||| | ||||||| Sbjct 542 AGAAAAAGACAACTGGTGGTCGAAATGGTTATGGGGCTAAGCTGACCAATATTT 489 >seq20442 Length=1199 Score = 86.0 bits (94), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 870806 GATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATT 870865 ||||| ||||||||||||||||| ||| |||||||| |||| ||| | | |||||||| Sbjct 1019 GATTACTCTTCTCCAAATATTGCAAAACAAATGCATGTTGGCCATCTTCGTTCAACTATA 1078 Query 870866 ATTGGTGAATCTATT 870880 |||||||| |||||| Sbjct 1079 ATTGGTGATTCTATT 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777909711135376