Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq53396 131 2e-25 seq10346 105 8e-18 seq53960 102 1e-16 >seq53396 Length=249 Score = 131 bits (144), Expect = 2e-25 Identities = 171/232 (74%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || || | ||| || || || | |||| ||||| ||||| ||||| Sbjct 22 TCGAAATCTTCGCCTCCAAGGTGAGTGTCTCCAACAGTCGACTTGACCTCAAAAATACCA 81 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | || | || || ||||| || |||||||||| ||||||||| || ||| Sbjct 82 TCTTCAATAGTCAAAATAGACACGTCAAAAGTTCCACCACCCAAGTCAAAAATCAGAACG 141 Query 7577 TT-CGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || || ||| ||| | |||||||| | ||| || || |||||||| || ||||| Sbjct 142 TTGCG----CTCGCCTTGGCGCTTCTTATCCACACCATAAGCAATAGCCGCAGCAGTTGG 197 Query 7633 TTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTT 7683 || || || ||||| || ||| || || |||| ||| ||| | ||||| || Sbjct 198 CTCGTTGATGATACGCAAAACA-TTAAGTCCAGAAATCGTTCCAGCATCCTT 248 >seq10346 Length=2631 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || | || || || || ||||| || || ||||||||||||||||| | | Sbjct 1156 TTCTTGTCCAATCCATAAGCTATTGCCGCAGCTGTCGGTTCATTAATAATACGTACAACA 1097 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || |||| || ||| | |||||||| || ||||| ||||| | |||||||||||| Sbjct 1096 TTAAGTCCAGAGATGGTTCCAGCATCTTTGGTAGCTTGACGTTGAGCATCGTTAAAGTAA 1037 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTT 7745 | |||||| || || || || | ||| |||| Sbjct 1036 GTCGGGACAGTAACCACAGCATGCGTAACTT 1006 >seq53960 Length=243 Score = 102 bits (112), Expect = 1e-16 Identities = 165/230 (72%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| ||||| ||||| ||||||| | || | ||||||||||| || ||||| ||| Sbjct 17 TTGACCTCAAAAATACCATCTTCAATAGTCAAAATAGAAACATCAAAAGTTCCACCGCCC 76 Query 7559 AGGTCAAAAATGAGTACGTT-CG-TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGA 7616 | ||||||||| | ||||| || | | | | | | |||||||| | ||| || | | Sbjct 77 AAGTCAAAAATCAAGACGTTGCGCTCGCATTGGCCT--TTCTTATCCAAACCATAGTCAA 134 Query 7617 TAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCC 7675 | | ||| || ||||| || || || ||||| || ||| || || |||| ||| || | Sbjct 135 T-GGCGCAGCAGTTGGCTCGTTGATGATACGCAAAACA-TTAAGTCCAGAAATCGTCCCA 192 Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||||| || || ||||| ||||| || || ||||| || || || || Sbjct 193 GCATCCTTTGTGGCTTGGCGTTGACTGTCATTGAAGTACGCAGGCACAGT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634666803064640